Search Results for author: Yubo Fan

Found 21 papers, 11 papers with code

Learning Site-specific Styles for Multi-institutional Unsupervised Cross-modality Domain Adaptation

1 code implementation21 Nov 2023 Han Liu, Yubo Fan, Zhoubing Xu, Benoit M. Dawant, Ipek Oguz

In this paper, we present our solution to tackle the multi-institutional unsupervised domain adaptation for the crossMoDA 2023 challenge.

Medical Image Segmentation Style Transfer +1

Nucleus-aware Self-supervised Pretraining Using Unpaired Image-to-image Translation for Histopathology Images

1 code implementation14 Sep 2023 Zhiyun Song, Penghui Du, Junpeng Yan, Kailu Li, Jianzhong Shou, Maode Lai, Yubo Fan, Yan Xu

Self-supervised pretraining attempts to enhance model performance by obtaining effective features from unlabeled data, and has demonstrated its effectiveness in the field of histopathology images.

Image-to-Image Translation Instance Segmentation +3

COLosSAL: A Benchmark for Cold-start Active Learning for 3D Medical Image Segmentation

1 code implementation22 Jul 2023 Han Liu, Hao Li, Xing Yao, Yubo Fan, Dewei Hu, Benoit Dawant, Vishwesh Nath, Zhoubing Xu, Ipek Oguz

Cold-start AL is highly relevant in many practical scenarios but has been under-explored, especially for 3D medical segmentation tasks requiring substantial annotation effort.

Active Learning Image Segmentation +3

DRMC: A Generalist Model with Dynamic Routing for Multi-Center PET Image Synthesis

1 code implementation11 Jul 2023 Zhiwen Yang, Yang Zhou, HUI ZHANG, Bingzheng Wei, Yubo Fan, Yan Xu

To address this, we develop a generalist model that shares architecture and parameters across centers to utilize the shared knowledge.

Image Generation

Zero-shot Nuclei Detection via Visual-Language Pre-trained Models

1 code implementation30 Jun 2023 Yongjian Wu, Yang Zhou, Jiya Saiyin, Bingzheng Wei, Maode Lai, Jianzhong Shou, Yubo Fan, Yan Xu

Foremost, our work demonstrates that the VLPM pre-trained on natural image-text pairs exhibits astonishing potential for downstream tasks in the medical field as well.

object-detection Object Detection

Cyclic Learning: Bridging Image-level Labels and Nuclei Instance Segmentation

1 code implementation5 Jun 2023 Yang Zhou, Yongjian Wu, Zihua Wang, Bingzheng Wei, Maode Lai, Jianzhong Shou, Yubo Fan, Yan Xu

Experiments on three datasets demonstrate the good generality of our method, which outperforms other image-level weakly supervised methods for nuclei instance segmentation, and achieves comparable performance to fully-supervised methods.

Instance Segmentation Multi-Task Learning +4

Adaptive Contrastive Learning with Dynamic Correlation for Multi-Phase Organ Segmentation

1 code implementation16 Oct 2022 Ho Hin Lee, Yucheng Tang, Han Liu, Yubo Fan, Leon Y. Cai, Qi Yang, Xin Yu, Shunxing Bao, Yuankai Huo, Bennett A. Landman

We evaluate our proposed approach on multi-organ segmentation with both non-contrast CT (NCCT) datasets and the MICCAI 2015 BTCV Challenge contrast-enhance CT (CECT) datasets.

Computed Tomography (CT) Contrastive Learning +1

Enhancing Data Diversity for Self-training Based Unsupervised Cross-modality Vestibular Schwannoma and Cochlea Segmentation

no code implementations23 Sep 2022 Han Liu, Yubo Fan, Ipek Oguz, Benoit M. Dawant

Automatic segmentation of vestibular schwannoma (VS) and cochlea from magnetic resonance imaging can facilitate VS treatment planning.

Segmentation Translation +1

3D Segmentation Guided Style-based Generative Adversarial Networks for PET Synthesis

no code implementations18 May 2022 Yang Zhou, Zhiwen Yang, HUI ZHANG, Eric I-Chao Chang, Yubo Fan, Yan Xu

(2) We adopt a task-driven strategy that couples a segmentation task with a generative adversarial network (GAN) framework to improve the translation performance.

Generative Adversarial Network Translation

ModDrop++: A Dynamic Filter Network with Intra-subject Co-training for Multiple Sclerosis Lesion Segmentation with Missing Modalities

1 code implementation7 Mar 2022 Han Liu, Yubo Fan, Hao Li, Jiacheng Wang, Dewei Hu, Can Cui, Ho Hin Lee, Huahong Zhang, Ipek Oguz

Previously, a training strategy termed Modality Dropout (ModDrop) has been applied to MS lesion segmentation to achieve the state-of-the-art performance with missing modality.

Lesion Segmentation

Unsupervised Domain Adaptation for Vestibular Schwannoma and Cochlea Segmentation via Semi-supervised Learning and Label Fusion

no code implementations25 Jan 2022 Han Liu, Yubo Fan, Can Cui, Dingjie Su, Andrew McNeil, Benoit M. Dawant

Automatic methods to segment the vestibular schwannoma (VS) tumors and the cochlea from magnetic resonance imaging (MRI) are critical to VS treatment planning.

Segmentation Unsupervised Domain Adaptation

Cross-Modality Domain Adaptation for Vestibular Schwannoma and Cochlea Segmentation

no code implementations13 Sep 2021 Han Liu, Yubo Fan, Can Cui, Dingjie Su, Andrew McNeil, Benoit M. Dawant

Automatic methods to segment the vestibular schwannoma (VS) tumors and the cochlea from magnetic resonance imaging (MRI) are critical to VS treatment planning.

Segmentation Unsupervised Domain Adaptation

Atlas-Based Segmentation of Intracochlear Anatomy in Metal Artifact Affected CT Images of the Ear with Co-trained Deep Neural Networks

no code implementations8 Jul 2021 Jianing Wang, Dingjie Su, Yubo Fan, Srijata Chakravorti, Jack H. Noble, Benoit M. Dawant

The segmentation of the ICA in the Post-CT images is subsequently obtained by transferring the predefined segmentation meshes of the ICA in the atlas image to the Post-CT images using the corresponding DDFs generated by the trained registration networks.

Anatomy

Unsupervised End-to-end Learning for Deformable Medical Image Registration

no code implementations23 Nov 2017 Siyuan Shan, Wen Yan, Xiaoqing Guo, Eric I-Chao Chang, Yubo Fan, Yan Xu

The contributions of our algorithm are threefold: (1) We transplant traditional image registration algorithms to an end-to-end convolutional neural network framework, while maintaining the unsupervised nature of image registration problems.

Deformable Medical Image Registration Image Registration +1

Learning Multi-level Features For Sensor-based Human Action Recognition

no code implementations22 Nov 2016 Yan Xu, Zhengyang Shen, Xin Zhang, Yifan Gao, Shujian Deng, Yipei Wang, Yubo Fan, Eric I-Chao Chang

This paper proposes a multi-level feature learning framework for human action recognition using a single body-worn inertial sensor.

Action Recognition Temporal Action Localization

Gland Instance Segmentation Using Deep Multichannel Neural Networks

no code implementations21 Nov 2016 Yan Xu, Yang Li, Yipei Wang, Mingyuan Liu, Yubo Fan, Maode Lai, Eric I-Chao Chang

Methods: We leverage the idea of image-to-image prediction in recent deep learning by designing an algorithm that automatically exploits and fuses complex multichannel information - regional, location, and boundary cues - in gland histology images.

Instance Segmentation Segmentation +1

Gland Instance Segmentation by Deep Multichannel Neural Networks

no code implementations17 Jul 2016 Yan Xu, Yang Li, Mingyuan Liu, Yipei Wang, Yubo Fan, Maode Lai, Eric I-Chao Chang

Here we leverage the idea of image-to-image prediction in recent deep learning by building a framework that automatically exploits and fuses complex multichannel information, regional, location and boundary patterns in gland histology images.

Instance Segmentation Segmentation +1

Cannot find the paper you are looking for? You can Submit a new open access paper.