Search Results for author: Syed Ali Khurram

Found 13 papers, 4 papers with code

An Automated Pipeline for Tumour-Infiltrating Lymphocyte Scoring in Breast Cancer

1 code implementation10 Nov 2023 Adam J Shephard, Mostafa Jahanifar, Ruoyu Wang, Muhammad Dawood, Simon Graham, Kastytis Sidlauskas, Syed Ali Khurram, Nasir M Rajpoot, Shan E Ahmed Raza

Tumour-infiltrating lymphocytes (TILs) are considered as a valuable prognostic markers in both triple-negative and human epidermal growth factor receptor 2 (HER2) positive breast cancer.

whole slide images

A Fully Automated and Explainable Algorithm for the Prediction of Malignant Transformation in Oral Epithelial Dysplasia

no code implementations6 Jul 2023 Adam J Shephard, Raja Muhammad Saad Bashir, Hanya Mahmood, Mostafa Jahanifar, Fayyaz Minhas, Shan E Ahmed Raza, Kris D McCombe, Stephanie G Craig, Jacqueline James, Jill Brooks, Paul Nankivell, Hisham Mehanna, Syed Ali Khurram, Nasir M Rajpoot

To address this, we developed a novel artificial intelligence algorithm that can assign an Oral Malignant Transformation (OMT) risk score, based on histological patterns in the in Haematoxylin and Eosin stained whole slide images, to quantify the risk of OED progression.

whole slide images

LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset

no code implementations16 Jan 2023 Yiping Jiao, Jeroen van der Laak, Shadi Albarqouni, Zhang Li, Tao Tan, Abhir Bhalerao, Jiabo Ma, Jiamei Sun, Johnathan Pocock, Josien P. W. Pluim, Navid Alemi Koohbanani, Raja Muhammad Saad Bashir, Shan E Ahmed Raza, Sibo Liu, Simon Graham, Suzanne Wetstein, Syed Ali Khurram, Thomas Watson, Nasir Rajpoot, Mitko Veta, Francesco Ciompi

Additionally, we present post-competition results where we show how the presented methods perform on an independent set of lung cancer slides, which was not part of the initial competition, as well as a comparison on lymphocyte assessment between presented methods and a panel of pathologists.

TIAger: Tumor-Infiltrating Lymphocyte Scoring in Breast Cancer for the TiGER Challenge

1 code implementation23 Jun 2022 Adam Shephard, Mostafa Jahanifar, Ruoyu Wang, Muhammad Dawood, Simon Graham, Kastytis Sidlauskas, Syed Ali Khurram, Nasir Rajpoot, Shan E Ahmed Raza

The Tumor InfiltratinG lymphocytes in breast cancER (TiGER) challenge, aims to assess the prognostic significance of computer-generated TILs scores for predicting survival as part of a Cox proportional hazards model.

Stain-Robust Mitotic Figure Detection for the Mitosis Domain Generalization Challenge

no code implementations2 Sep 2021 Mostafa Jahanifar, Adam Shephard, Neda Zamani Tajeddin, R. M. Saad Bashir, Mohsin Bilal, Syed Ali Khurram, Fayyaz Minhas, Nasir Rajpoot

The detection of mitotic figures from different scanners/sites remains an important topic of research, owing to its potential in assisting clinicians with tumour grading.

Domain Generalization

A digital score of tumour-associated stroma infiltrating lymphocytes predicts survival in head and neck squamous cell carcinoma

no code implementations16 Apr 2021 Muhammad Shaban, Shan E Ahmed Raza, Mariam Hassan, Arif Jamshed, Sajid Mushtaq, Asif Loya, Nikolaos Batis, Jill Brooks, Paul Nankivell, Neil Sharma, Max Robinson, Hisham Mehanna, Syed Ali Khurram, Nasir Rajpoot

In this study, our aim is to explore the prognostic significance of tumour-associated stroma infiltrating lymphocytes (TASILs) in head and neck squamous cell carcinoma (HNSCC) through an AI based automated method.

Clinical Knowledge whole slide images

Self-Path: Self-supervision for Classification of Pathology Images with Limited Annotations

no code implementations12 Aug 2020 Navid Alemi Koohbanani, Balagopal Unnikrishnan, Syed Ali Khurram, Pavitra Krishnaswamy, Nasir Rajpoot

In this paper, we propose a self-supervised CNN approach to leverage unlabeled data for learning generalizable and domain invariant representations in pathology images.

Domain Adaptation General Classification +1

PanNuke Dataset Extension, Insights and Baselines

8 code implementations24 Mar 2020 Jevgenij Gamper, Navid Alemi Koohbanani, Ksenija Benes, Simon Graham, Mostafa Jahanifar, Syed Ali Khurram, Ayesha Azam, Katherine Hewitt, Nasir Rajpoot

The emerging area of computational pathology (CPath) is ripe ground for the application of deep learning (DL) methods to healthcare due to the sheer volume of raw pixel data in whole-slide images (WSIs) of cancerous tissue slides.

Selection bias whole slide images

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