1 code implementation • 14 Mar 2024 • Robert Jewsbury, Ruoyu Wang, Abhir Bhalerao, Nasir Rajpoot, Quoc Dang Vu
Stain normalization algorithms aim to transform the color and intensity characteristics of a source multi-gigapixel histology image to match those of a target image, mitigating inconsistencies in the appearance of stains used to highlight cellular components in the images.
no code implementations • 29 Feb 2024 • Quoc Dang Vu, Caroline Fong, Anderley Gordon, Tom Lund, Tatiany L Silveira, Daniel Rodrigues, Katharina von Loga, Shan E Ahmed Raza, David Cunningham, Nasir Rajpoot
Gastric and oesophageal (OG) cancers are the leading causes of cancer mortality worldwide.
1 code implementation • 11 Mar 2023 • Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Martin Weigert, Uwe Schmidt, Wenhua Zhang, Jun Zhang, Sen yang, Jinxi Xiang, Xiyue Wang, Josef Lorenz Rumberger, Elias Baumann, Peter Hirsch, Lihao Liu, Chenyang Hong, Angelica I. Aviles-Rivero, Ayushi Jain, Heeyoung Ahn, Yiyu Hong, Hussam Azzuni, Min Xu, Mohammad Yaqub, Marie-Claire Blache, Benoît Piégu, Bertrand Vernay, Tim Scherr, Moritz Böhland, Katharina Löffler, Jiachen Li, Weiqin Ying, Chixin Wang, Dagmar Kainmueller, Carola-Bibiane Schönlieb, Shuolin Liu, Dhairya Talsania, Yughender Meda, Prakash Mishra, Muhammad Ridzuan, Oliver Neumann, Marcel P. Schilling, Markus Reischl, Ralf Mikut, Banban Huang, Hsiang-Chin Chien, Ching-Ping Wang, Chia-Yen Lee, Hong-Kun Lin, Zaiyi Liu, Xipeng Pan, Chu Han, Jijun Cheng, Muhammad Dawood, Srijay Deshpande, Raja Muhammad Saad Bashir, Adam Shephard, Pedro Costa, João D. Nunes, Aurélio Campilho, Jaime S. Cardoso, Hrishikesh P S, Densen Puthussery, Devika R G, Jiji C V, Ye Zhang, Zijie Fang, Zhifan Lin, Yongbing Zhang, Chunhui Lin, Liukun Zhang, Lijian Mao, Min Wu, Vi Thi-Tuong Vo, Soo-Hyung Kim, Taebum Lee, Satoshi Kondo, Satoshi Kasai, Pranay Dumbhare, Vedant Phuse, Yash Dubey, Ankush Jamthikar, Trinh Thi Le Vuong, Jin Tae Kwak, Dorsa Ziaei, Hyun Jung, Tianyi Miao, David Snead, Shan E Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot
Nuclear detection, segmentation and morphometric profiling are essential in helping us further understand the relationship between histology and patient outcome.
no code implementations • 9 Jan 2023 • Quoc Dang Vu, Robert Jewsbury, Simon Graham, Mostafa Jahanifar, Shan E Ahmed Raza, Fayyaz Minhas, Abhir Bhalerao, Nasir Rajpoot
Since the introduction of digital and computational pathology as a field, one of the major problems in the clinical application of algorithms has been the struggle to generalize well to examples outside the distribution of the training data.
1 code implementation • 23 Aug 2022 • Trinh Thi Le Vuong, Quoc Dang Vu, Mostafa Jahanifar, Simon Graham, Jin Tae Kwak, Nasir Rajpoot
The appearance of histopathology images depends on tissue type, staining and digitization procedure.
1 code implementation • 28 Feb 2022 • Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Shan E Ahmed Raza, Fayyaz Minhas, David Snead, Nasir Rajpoot
In this paper, we present a multi-task learning approach for segmentation and classification of nuclei, glands, lumina and different tissue regions that leverages data from multiple independent data sources.
1 code implementation • 14 Feb 2022 • Quoc Dang Vu, Kashif Rajpoot, Shan E Ahmed Raza, Nasir Rajpoot
Based on our experiments involving various datasets consisting of a total of 5, 306 WSIs, the results demonstrate that H2T based holistic WSI-level representations offer competitive performance compared to recent state-of-the-art methods and can be readily utilized for various downstream analysis tasks.
no code implementations • 29 Nov 2021 • Simon Graham, Mostafa Jahanifar, Quoc Dang Vu, Giorgos Hadjigeorghiou, Thomas Leech, David Snead, Shan E Ahmed Raza, Fayyaz Minhas, Nasir Rajpoot
The challenge encourages researchers to develop algorithms that perform segmentation, classification and counting of nuclei within the current largest known publicly available nuclei-level dataset in CPath, containing around half a million labelled nuclei.
4 code implementations • 16 Dec 2018 • Simon Graham, Quoc Dang Vu, Shan E Ahmed Raza, Ayesha Azam, Yee Wah Tsang, Jin Tae Kwak, Nasir Rajpoot
Nuclear segmentation and classification within Haematoxylin & Eosin stained histology images is a fundamental prerequisite in the digital pathology work-flow.
Ranked #2 on Multi-tissue Nucleus Segmentation on CoNSeP
no code implementations • 31 Oct 2018 • Quoc Dang Vu, Simon Graham, Minh Nguyen Nhat To, Muhammad Shaban, Talha Qaiser, Navid Alemi Koohbanani, Syed Ali Khurram, Tahsin Kurc, Keyvan Farahani, Tianhao Zhao, Rajarsi Gupta, Jin Tae Kwak, Nasir Rajpoot, Joel Saltz
Segmentation of nuclei and classification of tissue images are two common tasks in tissue image analysis.
no code implementations • 13 Aug 2018 • Guilherme Aresta, Teresa Araújo, Scotty Kwok, Sai Saketh Chennamsetty, Mohammed Safwan, Varghese Alex, Bahram Marami, Marcel Prastawa, Monica Chan, Michael Donovan, Gerardo Fernandez, Jack Zeineh, Matthias Kohl, Christoph Walz, Florian Ludwig, Stefan Braunewell, Maximilian Baust, Quoc Dang Vu, Minh Nguyen Nhat To, Eal Kim, Jin Tae Kwak, Sameh Galal, Veronica Sanchez-Freire, Nadia Brancati, Maria Frucci, Daniel Riccio, Yaqi Wang, Lingling Sun, Kaiqiang Ma, Jiannan Fang, Ismael Kone, Lahsen Boulmane, Aurélio Campilho, Catarina Eloy, António Polónia, Paulo Aguiar
From the submitted algorithms it was possible to push forward the state-of-the-art in terms of accuracy (87%) in automatic classification of breast cancer with histopathological images.