Pathological Primitive Segmentation Based on Visual Foundation Model with Zero-Shot Mask Generation

2 code implementations • 12 Apr 2024 • Abu Bakor Hayat Arnob, Xiangxue Wang, Yiping Jiao, Xiao Gan, Wenlong Ming, Jun Xu

Primitive detection and segmentation in digitized tissue samples are essential for objective and automated diagnosis and prognosis of cancer.

Segmentation

LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset

no code implementations • 16 Jan 2023 • Yiping Jiao, Jeroen van der Laak, Shadi Albarqouni, Zhang Li, Tao Tan, Abhir Bhalerao, Jiabo Ma, Jiamei Sun, Johnathan Pocock, Josien P. W. Pluim, Navid Alemi Koohbanani, Raja Muhammad Saad Bashir, Shan E Ahmed Raza, Sibo Liu, Simon Graham, Suzanne Wetstein, Syed Ali Khurram, Thomas Watson, Nasir Rajpoot, Mitko Veta, Francesco Ciompi

Additionally, we present post-competition results where we show how the presented methods perform on an independent set of lung cancer slides, which was not part of the initial competition, as well as a comparison on lymphocyte assessment between presented methods and a panel of pathologists.