1 code implementation • 20 Oct 2023 • Philippe Chlenski, Ethan Turok, Antonio Moretti, Itsik Pe'er
In response to these challenges, we present hyperDT, a novel extension of decision tree algorithms into hyperbolic space.
1 code implementation • 31 May 2021 • Antonio Khalil Moretti, Liyi Zhang, Christian A. Naesseth, Hadiah Venner, David Blei, Itsik Pe'er
Bayesian phylogenetic inference is often conducted via local or sequential search over topologies and branch lengths using algorithms such as random-walk Markov chain Monte Carlo (MCMC) or Combinatorial Sequential Monte Carlo (CSMC).
3 code implementations • 9 Nov 2019 • Iddo Drori, Darshan Thaker, Arjun Srivatsa, Daniel Jeong, Yueqi Wang, Linyong Nan, Fan Wu, Dimitri Leggas, Jinhao Lei, Weiyi Lu, Weilong Fu, Yuan Gao, Sashank Karri, Anand Kannan, Antonio Moretti, Mohammed AlQuraishi, Chen Keasar, Itsik Pe'er
Our dataset consists of amino acid sequences, Q8 secondary structures, position specific scoring matrices, multiple sequence alignment co-evolutionary features, backbone atom distance matrices, torsion angles, and 3D coordinates.
1 code implementation • 20 Sep 2019 • Antonio Khalil Moretti, Zizhao Wang, Luhuan Wu, Iddo Drori, Itsik Pe'er
We apply SVO to three nonlinear latent dynamics tasks and provide statistics to rigorously quantify the predictions of filtered and smoothed objectives.
no code implementations • ICLR Workshop DeepGenStruct 2019 • Antonio Moretti, Zizhao Wang, Luhuan Wu, Itsik Pe'er
The task of recovering nonlinear dynamics and latent structure from a population recording is a challenging problem in statistical neuroscience motivating the development of novel techniques in time series analysis.
2 code implementations • 17 Nov 2018 • Iddo Drori, Isht Dwivedi, Pranav Shrestha, Jeffrey Wan, Yueqi Wang, Yunchu He, Anthony Mazza, Hugh Krogh-Freeman, Dimitri Leggas, Kendal Sandridge, Linyong Nan, Kaveri Thakoor, Chinmay Joshi, Sonam Goenka, Chen Keasar, Itsik Pe'er
In the spirit of reproducible research we make our data, models and code available, aiming to set a gold standard for purity of training and testing sets.
1 code implementation • 11 Nov 2017 • Avinash Bukkittu, Baihan Lin, Trung Vu, Itsik Pe'er
These observations were modeled as a cycle of hidden states with randomness allowing deviation from a canonical pattern of transitions and emissions, under the hypothesis that the averaged features of hidden states would serve to informatively characterize classes of patients/controls.