no code implementations • 7 Feb 2021 • Moshe Eliasof, Tue Boesen, Eldad Haber, Chen Keasar, Eran Treister
Recent advancements in machine learning techniques for protein folding motivate better results in its inverse problem -- protein design.
3 code implementations • 9 Nov 2019 • Iddo Drori, Darshan Thaker, Arjun Srivatsa, Daniel Jeong, Yueqi Wang, Linyong Nan, Fan Wu, Dimitri Leggas, Jinhao Lei, Weiyi Lu, Weilong Fu, Yuan Gao, Sashank Karri, Anand Kannan, Antonio Moretti, Mohammed AlQuraishi, Chen Keasar, Itsik Pe'er
Our dataset consists of amino acid sequences, Q8 secondary structures, position specific scoring matrices, multiple sequence alignment co-evolutionary features, backbone atom distance matrices, torsion angles, and 3D coordinates.
2 code implementations • 17 Nov 2018 • Iddo Drori, Isht Dwivedi, Pranav Shrestha, Jeffrey Wan, Yueqi Wang, Yunchu He, Anthony Mazza, Hugh Krogh-Freeman, Dimitri Leggas, Kendal Sandridge, Linyong Nan, Kaveri Thakoor, Chinmay Joshi, Sonam Goenka, Chen Keasar, Itsik Pe'er
In the spirit of reproducible research we make our data, models and code available, aiming to set a gold standard for purity of training and testing sets.