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Greatest papers with code

Ultra-large alignments using Phylogeny-aware Profiles

5 Apr 2015smirarab/sepp

Many biological questions, including the estimation of deep evolutionary histories and the detection of remote homology between protein sequences, rely upon multiple sequence alignments (MSAs) and phylogenetic trees of large datasets.

MULTIPLE SEQUENCE ALIGNMENT

MSA Transformer

13 Feb 2021The-AI-Summer/self-attention-cv

Unsupervised protein language models trained across millions of diverse sequences learn structure and function of proteins.

LANGUAGE MODELLING MULTIPLE SEQUENCE ALIGNMENT

Accurate Protein Structure Prediction by Embeddings and Deep Learning Representations

9 Nov 2019idrori/cu-tsp

Our dataset consists of amino acid sequences, Q8 secondary structures, position specific scoring matrices, multiple sequence alignment co-evolutionary features, backbone atom distance matrices, torsion angles, and 3D coordinates.

MULTIPLE SEQUENCE ALIGNMENT PROTEIN STRUCTURE PREDICTION

Align-RUDDER: Learning From Few Demonstrations by Reward Redistribution

29 Sep 2020ml-jku/align-rudder

Align-RUDDER outperforms competitors on complex artificial tasks with delayed reward and few demonstrations.

GENERAL REINFORCEMENT LEARNING MINECRAFT MULTIPLE SEQUENCE ALIGNMENT SAFE EXPLORATION

DLPAlign: A Deep Learning based Progressive Alignment Method for Multiple Protein Sequences

21 Nov 2020kuangmeng/DLPAlign

This paper proposed a novel and straightforward approach to improve the accuracy of progressive multiple protein sequence alignment method.

DECISION MAKING MULTIPLE SEQUENCE ALIGNMENT PROTEIN SECONDARY STRUCTURE PREDICTION

Optimizing scoring function of dynamic programming of pairwise profile alignment using derivative free neural network

30 Aug 2017yamada-kd/nepal

Nepal, the pairwise profile aligner with the novel scoring function significantly improved both alignment sensitivity and precision, compared to aligners with the existing functions.

MULTIPLE SEQUENCE ALIGNMENT