no code implementations • 28 Feb 2024 • Jiahao Huang, Liutao Yang, Fanwen Wang, Yinzhe Wu, Yang Nan, Angelica I. Aviles-Rivero, Carola-Bibiane Schönlieb, Daoqiang Zhang, Guang Yang
The recent Mamba model has shown remarkable adaptability for visual representation learning, including in medical imaging tasks.
no code implementations • 12 Feb 2024 • Shiyi Wang, Yang Nan, Felder Federico N, Sheng Zhang, Walsh Simon L F, Guang Yang
The most popular algorithms in medical segmentation, 3D U-Net and its variants, can directly implement the task of lung trachea segmentation, but its failure to consider the special tree-like structure of the trachea suggests that there is much room for improvement in its segmentation accuracy.
no code implementations • 29 Jan 2024 • Jiahao Huang, Yinzhe Wu, Fanwen Wang, Yingying Fang, Yang Nan, Cagan Alkan, Lei Xu, Zhifan Gao, Weiwen Wu, Lei Zhu, Zhaolin Chen, Peter Lally, Neal Bangerter, Kawin Setsompop, Yike Guo, Daniel Rueckert, Ge Wang, Guang Yang
Magnetic Resonance Imaging (MRI) is a pivotal clinical diagnostic tool, yet its extended scanning times often compromise patient comfort and image quality, especially in volumetric, temporal and quantitative scans.
no code implementations • 21 Dec 2023 • Yang Nan, Xiaodan Xing, Shiyi Wang, Zeyu Tang, Federico N Felder, Sheng Zhang, Roberta Eufrasia Ledda, Xiaoliu Ding, Ruiqi Yu, Weiping Liu, Feng Shi, Tianyang Sun, Zehong Cao, Minghui Zhang, Yun Gu, Hanxiao Zhang, Jian Gao, Pingyu Wang, Wen Tang, Pengxin Yu, Han Kang, Junqiang Chen, Xing Lu, Boyu Zhang, Michail Mamalakis, Francesco Prinzi, Gianluca Carlini, Lisa Cuneo, Abhirup Banerjee, Zhaohu Xing, Lei Zhu, Zacharia Mesbah, Dhruv Jain, Tsiry Mayet, Hongyu Yuan, Qing Lyu, Abdul Qayyum, Moona Mazher, Athol Wells, Simon LF Walsh, Guang Yang
The online validation set incorporated 52 HRCT scans from patients with fibrotic lung disease and the offline test set included 140 cases from fibrosis and COVID-19 patients.
no code implementations • 7 Dec 2023 • Peng Tang, Xintong Yan, Yang Nan, Xiaobin Hu, Bjoern H Menzee. Sebastian Krammer, Tobias Lasser
Most convolutional neural network (CNN) based methods for skin cancer classification obtain their results using only dermatological images.
no code implementations • 9 Oct 2023 • Shiyi Wang, Yang Nan, Simon Walsh, Guang Yang
We propose a novel Deep Active Learning (DeepAL) model-3D Wasserstein Discriminative UNet (WD-UNet) for reducing the annotation effort of medical 3D Computed Tomography (CT) segmentation.
no code implementations • 6 Sep 2023 • Yinzhe Wu, Sharon Jewell, Xiaodan Xing, Yang Nan, Anthony J. Strong, Guang Yang, Martyn G. Boutelle
This study presented a novel ultra-light-weight multi-modal deep-learning network to fuse EEG spectrogram imaging and temporal power vectors to enhance SD identification accuracy over each single electrode, allowing flexible EEG map and paving the way for SD detection on ultra-low-density EEG with variable electrode positioning.
no code implementations • 4 Jul 2023 • Peng Tang, Yang Nan, Tobias Lasser
However, most methods only focus on designing a better module for multi-modal data fusion; few methods explore utilizing the label correlation between SPC and skin disease for performance improvement.
no code implementations • 25 May 2023 • Xiaodan Xing, Federico Felder, Yang Nan, Giorgos Papanastasiou, Walsh Simon, Guang Yang
In addition, we have empirically demonstrated that the utility score does not require images with both high fidelity and high variety.
1 code implementation • 3 May 2023 • Xiaodan Xing, Yang Nan, Federico Felder, Simon Walsh, Guang Yang
Training medical AI algorithms requires large volumes of accurately labeled datasets, which are difficult to obtain in the real world.
1 code implementation • 10 Mar 2023 • Minghui Zhang, Yangqian Wu, Hanxiao Zhang, Yulei Qin, Hao Zheng, Wen Tang, Corey Arnold, Chenhao Pei, Pengxin Yu, Yang Nan, Guang Yang, Simon Walsh, Dominic C. Marshall, Matthieu Komorowski, Puyang Wang, Dazhou Guo, Dakai Jin, Ya'nan Wu, Shuiqing Zhao, Runsheng Chang, Boyu Zhang, Xing Lv, Abdul Qayyum, Moona Mazher, Qi Su, Yonghuang Wu, Ying'ao Liu, Yufei Zhu, Jiancheng Yang, Ashkan Pakzad, Bojidar Rangelov, Raul San Jose Estepar, Carlos Cano Espinosa, Jiayuan Sun, Guang-Zhong Yang, Yun Gu
In recent years, new methods have extended the reach of pulmonary airway segmentation that is closer to the limit of image resolution.
1 code implementation • 7 Sep 2022 • Tianye Shu, Ke Shang, Hisao Ishibuchi, Yang Nan
In this study, we examine the effects of the archive size on three aspects: (i) the quality of the selected final solution set, (ii) the total computation time for the archive maintenance and the final solution set selection, and (iii) the required memory size.
no code implementations • 5 Sep 2022 • Yang Nan, Javier Del Ser, Zeyu Tang, Peng Tang, Xiaodan Xing, Yingying Fang, Francisco Herrera, Witold Pedrycz, Simon Walsh, Guang Yang
especially for cohorts with different lung diseases.
no code implementations • 11 Aug 2022 • Hao Li, Yang Nan, Javier Del Ser, Guang Yang
Despite recent advances in the accuracy of brain tumor segmentation, the results still suffer from low reliability and robustness.
no code implementations • 4 Aug 2022 • Yang Nan, Peng Tang, Guyue Zhang, Caihong Zeng, Zhihong Liu, Zhifan Gao, Heye Zhang, Guang Yang
However, most machine and deep learning based approaches are supervised and developed using a large number of training samples, in which the pixelwise annotations are expensive and sometimes can be impossible to obtain.
no code implementations • 19 Jul 2022 • Hao Li, Yang Nan, Javier Del Ser, Guang Yang
The performance improvement due to the proposed LK attention module was also statistically validated.
no code implementations • 12 Jul 2022 • Hao Li, Zeyu Tang, Yang Nan, Guang Yang
Various structures in human physiology follow a treelike morphology, which often expresses complexity at very fine scales.
1 code implementation • 20 Jun 2022 • Xiaodan Xing, Jiahao Huang, Yang Nan, Yinzhe Wu, Chengjia Wang, Zhifan Gao, Simon Walsh, Guang Yang
The destitution of image data and corresponding expert annotations limit the training capacities of AI diagnostic models and potentially inhibit their performance.
no code implementations • 1 Apr 2022 • Jiahao Huang, Yingying Fang, Yang Nan, Huanjun Wu, Yinzhe Wu, Zhifan Gao, Yang Li, Zidong Wang, Pietro Lio, Daniel Rueckert, Yonina C. Eldar, Guang Yang
Research studies have shown no qualms about using data driven deep learning models for downstream tasks in medical image analysis, e. g., anatomy segmentation and lesion detection, disease diagnosis and prognosis, and treatment planning.
no code implementations • 11 Mar 2022 • Yang Nan, Fengyi Li, Peng Tang, Guyue Zhang, Caihong Zeng, Guotong Xie, Zhihong Liu, Guang Yang
Recognition of glomeruli lesions is the key for diagnosis and treatment planning in kidney pathology; however, the coexisting glomerular structures such as mesangial regions exacerbate the difficulties of this task.
1 code implementation • 18 Jan 2022 • Ke Shang, Tianye Shu, Hisao Ishibuchi, Yang Nan, Lie Meng Pang
This paper aims to fill this research gap by proposing a benchmark test suite for subset selection from large candidate solution sets, and comparing some representative methods using the proposed test suite.
no code implementations • 17 Jan 2022 • Yang Nan, Javier Del Ser, Simon Walsh, Carola Schönlieb, Michael Roberts, Ian Selby, Kit Howard, John Owen, Jon Neville, Julien Guiot, Benoit Ernst, Ana Pastor, Angel Alberich-Bayarri, Marion I. Menzel, Sean Walsh, Wim Vos, Nina Flerin, Jean-Paul Charbonnier, Eva van Rikxoort, Avishek Chatterjee, Henry Woodruff, Philippe Lambin, Leonor Cerdá-Alberich, Luis Martí-Bonmatí, Francisco Herrera, Guang Yang
Removing the bias and variance of multicentre data has always been a challenge in large scale digital healthcare studies, which requires the ability to integrate clinical features extracted from data acquired by different scanners and protocols to improve stability and robustness.
1 code implementation • 31 Oct 2021 • Michael Yeung, Leonardo Rundo, Yang Nan, Evis Sala, Carola-Bibiane Schönlieb, Guang Yang
However, it is well known that the DSC loss is poorly calibrated, resulting in overconfident predictions that cannot be usefully interpreted in biomedical and clinical practice.
no code implementations • 20 Apr 2021 • Ke Shang, Hisao Ishibuchi, WeiYu Chen, Yang Nan, Weiduo Liao
Then, we show that a uniform solution set on the plane-based Pareto front is not always optimal for hypervolume maximization.
5 code implementations • 2 Dec 2019 • Nicholas Heller, Fabian Isensee, Klaus H. Maier-Hein, Xiaoshuai Hou, Chunmei Xie, Fengyi Li, Yang Nan, Guangrui Mu, Zhiyong Lin, Miofei Han, Guang Yao, Yaozong Gao, Yao Zhang, Yixin Wang, Feng Hou, Jiawei Yang, Guangwei Xiong, Jiang Tian, Cheng Zhong, Jun Ma, Jack Rickman, Joshua Dean, Bethany Stai, Resha Tejpaul, Makinna Oestreich, Paul Blake, Heather Kaluzniak, Shaneabbas Raza, Joel Rosenberg, Keenan Moore, Edward Walczak, Zachary Rengel, Zach Edgerton, Ranveer Vasdev, Matthew Peterson, Sean McSweeney, Sarah Peterson, Arveen Kalapara, Niranjan Sathianathen, Nikolaos Papanikolopoulos, Christopher Weight
The 2019 Kidney and Kidney Tumor Segmentation challenge (KiTS19) was a competition held in conjunction with the 2019 International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) which sought to address these issues and stimulate progress on this automatic segmentation problem.
no code implementations • 20 Dec 2017 • Yang Nan, Gianmarc Coppola, Qiaokang Liang, Kunglin Zou, Wei Sun, Dan Zhang, Yaonan Wang, Guanzhen Yu
Gastric cancer is the second leading cause of cancer-related deaths worldwide, and the major hurdle in biomedical image analysis is the determination of the cancer extent.