Search Results for author: Xianbin Ye

Found 5 papers, 1 papers with code

Pre-Training on Large-Scale Generated Docking Conformations with HelixDock to Unlock the Potential of Protein-ligand Structure Prediction Models

no code implementations21 Oct 2023 Lihang Liu, Donglong He, Xianbin Ye, Jingbo Zhou, Shanzhuo Zhang, Xiaonan Zhang, Jun Li, Hua Chai, Fan Wang, Jingzhou He, Liang Zheng, Yonghui Li, Xiaomin Fang

In this work, we show that by pre-training a geometry-aware SE(3)-Equivariant neural network on a large-scale docking conformation generated by traditional physics-based docking tools and then fine-tuning with a limited set of experimentally validated receptor-ligand complexes, we can achieve outstanding performance.

Drug Discovery Molecular Docking

CandidateDrug4Cancer: An Open Molecular Graph Learning Benchmark on Drug Discovery for Cancer

no code implementations2 Mar 2022 Xianbin Ye, Ziliang Li, Fei Ma, Zongbi Yi, Pengyong Li, Jun Wang, Peng Gao, Yixuan Qiao, Guotong Xie

Anti-cancer drug discoveries have been serendipitous, we sought to present the Open Molecular Graph Learning Benchmark, named CandidateDrug4Cancer, a challenging and realistic benchmark dataset to facilitate scalable, robust, and reproducible graph machine learning research for anti-cancer drug discovery.

Drug Discovery Graph Learning

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