no code implementations • 21 Oct 2023 • Lihang Liu, Donglong He, Xianbin Ye, Jingbo Zhou, Shanzhuo Zhang, Xiaonan Zhang, Jun Li, Hua Chai, Fan Wang, Jingzhou He, Liang Zheng, Yonghui Li, Xiaomin Fang
In this work, we show that by pre-training a geometry-aware SE(3)-Equivariant neural network on a large-scale docking conformation generated by traditional physics-based docking tools and then fine-tuning with a limited set of experimentally validated receptor-ligand complexes, we can achieve outstanding performance.
no code implementations • 18 May 2022 • Yixuan Qiao, Hao Chen, Jun Wang, Yongquan Lai, Tuozhen Liu, Xianbin Ye, Xin Tang, Rui Fang, Peng Gao, Wenfeng Xie, Guotong Xie
This paper describes the PASH participation in TREC 2021 Deep Learning Track.
no code implementations • 2 Mar 2022 • Xianbin Ye, Ziliang Li, Fei Ma, Zongbi Yi, Pengyong Li, Jun Wang, Peng Gao, Yixuan Qiao, Guotong Xie
Anti-cancer drug discoveries have been serendipitous, we sought to present the Open Molecular Graph Learning Benchmark, named CandidateDrug4Cancer, a challenging and realistic benchmark dataset to facilitate scalable, robust, and reproducible graph machine learning research for anti-cancer drug discovery.
1 code implementation • 18 Nov 2021 • Zijing Liu, Xianbin Ye, Xiaomin Fang, Fan Wang, Hua Wu, Haifeng Wang
Machine learning shows great potential in virtual screening for drug discovery.
no code implementations • 24 Jun 2021 • Yixuan Qiao, Hao Chen, Jun Wang, Yihao Chen, Xianbin Ye, Ziliang Li, Xianbiao Qi, Peng Gao, Guotong Xie
TextVQA requires models to read and reason about text in images to answer questions about them.