Search Results for author: Tom Claassen

Found 16 papers, 8 papers with code

Establishing Markov Equivalence in Cyclic Directed Graphs

1 code implementation1 Sep 2023 Tom Claassen, Joris M. Mooij

We present a new, efficient procedure to establish Markov equivalence between directed graphs that may or may not contain cycles under the \textit{d}-separation criterion.

Towards a Benchmark for Scientific Understanding in Humans and Machines

no code implementations20 Apr 2023 Kristian Gonzalez Barman, Sascha Caron, Tom Claassen, Henk de Regt

We extend this notion by considering a set of questions that can gauge different levels of scientific understanding, covering information retrieval, the capability to arrange information to produce an explanation, and the ability to infer how things would be different under different circumstances.

Benchmarking Information Retrieval +2

Spectral Ranking of Causal Influence in Complex Systems

no code implementations24 Dec 2020 Errol Zalmijn, Tom Heskes, Tom Claassen

Like natural complex systems such as the Earth's climate or a living cell, semiconductor lithography systems are characterized by nonlinear dynamics across more than a dozen orders of magnitude in space and time.

Time Series Analysis Information Theory Information Theory Adaptation and Self-Organizing Systems Physics and Society

Inferring the Direction of a Causal Link and Estimating Its Effect via a Bayesian Mendelian Randomization Approach

1 code implementation18 Dec 2020 Ioan Gabriel Bucur, Tom Claassen, Tom Heskes

In this paper, we propose a Bayesian approach called BayesMR that is a generalization of the Mendelian randomization technique in which we allow for pleiotropic effects and, crucially, for the possibility of reverse causation.

MASSIVE: Tractable and Robust Bayesian Learning of Many-Dimensional Instrumental Variable Models

no code implementations18 Dec 2020 Ioan Gabriel Bucur, Tom Claassen, Tom Heskes

Unfortunately, searching for proper instruments in a many-dimensional set of candidates is a daunting task due to the intractable model space and the fact that we cannot directly test which of these candidates are valid, so most existing search methods either rely on overly stringent modeling assumptions or fail to capture the inherent model uncertainty in the selection process.

Causal Inference valid

Constraint-Based Causal Discovery using Partial Ancestral Graphs in the presence of Cycles

no code implementations1 May 2020 Joris M. Mooij, Tom Claassen

While feedback loops are known to play important roles in many complex systems, their existence is ignored in a large part of the causal discovery literature, as systems are typically assumed to be acyclic from the outset.

Causal Discovery Causal Inference

Large-Scale Local Causal Inference of Gene Regulatory Relationships

1 code implementation3 Sep 2019 Ioan Gabriel Bucur, Tom Claassen, Tom Heskes

Many of these computational methods are designed to infer individual regulatory relationships among genes from data on gene expression.

Causal Inference

A Bayesian Approach for Inferring Local Causal Structure in Gene Regulatory Networks

1 code implementation18 Sep 2018 Ioan Gabriel Bucur, Tom van Bussel, Tom Claassen, Tom Heskes

Gene regulatory networks play a crucial role in controlling an organism's biological processes, which is why there is significant interest in developing computational methods that are able to extract their structure from high-throughput genetic data.

Domain Adaptation by Using Causal Inference to Predict Invariant Conditional Distributions

1 code implementation NeurIPS 2018 Sara Magliacane, Thijs van Ommen, Tom Claassen, Stephan Bongers, Philip Versteeg, Joris M. Mooij

An important goal common to domain adaptation and causal inference is to make accurate predictions when the distributions for the source (or training) domain(s) and target (or test) domain(s) differ.

Causal Inference Domain Adaptation

Robust Causal Estimation in the Large-Sample Limit without Strict Faithfulness

1 code implementation6 Apr 2017 Ioan Gabriel Bucur, Tom Claassen, Tom Heskes

Causal effect estimation from observational data is an important and much studied research topic.

Causal Discovery

Joint Causal Inference from Multiple Contexts

no code implementations30 Nov 2016 Joris M. Mooij, Sara Magliacane, Tom Claassen

We explain how several well-known causal discovery algorithms can be seen as addressing special cases of the JCI framework, and we also propose novel implementations that extend existing causal discovery methods for purely observational data to the JCI setting.

Causal Discovery Causal Inference

Ancestral Causal Inference

1 code implementation NeurIPS 2016 Sara Magliacane, Tom Claassen, Joris M. Mooij

Constraint-based causal discovery from limited data is a notoriously difficult challenge due to the many borderline independence test decisions.

Causal Discovery Causal Inference

Proof Supplement - Learning Sparse Causal Models is not NP-hard (UAI2013)

no code implementations6 Nov 2014 Tom Claassen, Joris M. Mooij, Tom Heskes

The algorithm is an adaptation of the well-known FCI algorithm by (Spirtes et al., 2000) that is also sound and complete, but has worst case complexity exponential in $N$.

Model Discovery Selection bias

Learning Sparse Causal Models is not NP-hard

no code implementations26 Sep 2013 Tom Claassen, Joris Mooij, Tom Heskes

This paper shows that causal model discovery is not an NP-hard problem, in the sense that for sparse graphs bounded by node degree k the sound and complete causal model can be obtained in worst case order N^{2(k+2)} independence tests, even when latent variables and selection bias may be present.

Causal Discovery Model Discovery +1

Causal discovery in multiple models from different experiments

no code implementations NeurIPS 2010 Tom Claassen, Tom Heskes

We present the MCI-algorithm as the first method that can infer provably valid causal relations in the large sample limit from different experiments.

Causal Discovery valid

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