Search Results for author: Stergios Christodoulidis

Found 18 papers, 9 papers with code

On the detection of Out-Of-Distribution samples in Multiple Instance Learning

1 code implementation11 Sep 2023 Loïc Le Bescond, Maria Vakalopoulou, Stergios Christodoulidis, Fabrice André, Hugues Talbot

While significant efforts have been devoted to OOD detection in classical supervised settings, the context of weakly supervised learning, particularly the Multiple Instance Learning (MIL) framework, remains under-explored.

Multiple Instance Learning Out of Distribution (OOD) Detection +1

Spatio-Temporal Analysis of Patient-Derived Organoid Videos Using Deep Learning for the Prediction of Drug Efficacy

no code implementations28 Aug 2023 Leo Fillioux, Emilie Gontran, Jérôme Cartry, Jacques RR Mathieu, Sabrina Bedja, Alice Boilève, Paul-Henry Cournède, Fanny Jaulin, Stergios Christodoulidis, Maria Vakalopoulou

In particular, PDOs are attracting interest in the field of Functional Precision Medicine (FPM), which is based upon an ex-vivo drug test in which living tumor cells (such as PDOs) from a specific patient are exposed to a panel of anti-cancer drugs.

Multiple Instance Learning

Artifact Removal in Histopathology Images

no code implementations29 Nov 2022 Cameron Dahan, Stergios Christodoulidis, Maria Vakalopoulou, Joseph Boyd

In the clinical setting of histopathology, whole-slide image (WSI) artifacts frequently arise, distorting regions of interest, and having a pernicious impact on WSI analysis.

Image-to-Image Translation Translation

Region-guided CycleGANs for Stain Transfer in Whole Slide Images

1 code implementation26 Aug 2022 Joseph Boyd, Irène Villa, Marie-Christine Mathieu, Eric Deutsch, Nikos Paragios, Maria Vakalopoulou, Stergios Christodoulidis

We present a use case on whole slide images, where an IHC stain provides an experimentally generated signal for metastatic cells.

whole slide images

The Brain Tumor Sequence Registration (BraTS-Reg) Challenge: Establishing Correspondence Between Pre-Operative and Follow-up MRI Scans of Diffuse Glioma Patients

no code implementations13 Dec 2021 Bhakti Baheti, Satrajit Chakrabarty, Hamed Akbari, Michel Bilello, Benedikt Wiestler, Julian Schwarting, Evan Calabrese, Jeffrey Rudie, Syed Abidi, Mina Mousa, Javier Villanueva-Meyer, Brandon K. K. Fields, Florian Kofler, Russell Takeshi Shinohara, Juan Eugenio Iglesias, Tony C. W. Mok, Albert C. S. Chung, Marek Wodzinski, Artur Jurgas, Niccolo Marini, Manfredo Atzori, Henning Muller, Christoph Grobroehmer, Hanna Siebert, Lasse Hansen, Mattias P. Heinrich, Luca Canalini, Jan Klein, Annika Gerken, Stefan Heldmann, Alessa Hering, Horst K. Hahn, Mingyuan Meng, Lei Bi, Dagan Feng, Jinman Kim, Ramy A. Zeineldin, Mohamed E. Karar, Franziska Mathis-Ullrich, Oliver Burgert, Javid Abderezaei, Aymeric Pionteck, Agamdeep Chopra, Mehmet Kurt, Kewei Yan, Yonghong Yan, Zhe Tang, Jianqiang Ma, Sahar Almahfouz Nasser, Nikhil Cherian Kurian, Mohit Meena, Saqib Shamsi, Amit Sethi, Nicholas J. Tustison, Brian B. Avants, Philip Cook, James C. Gee, Lin Tian, Hastings Greer, Marc Niethammer, Andrew Hoopes, Malte Hoffmann, Adrian V. Dalca, Stergios Christodoulidis, Theo Estiene, Maria Vakalopoulou, Nikos Paragios, Daniel S. Marcus, Christos Davatzikos, Aristeidis Sotiras, Bjoern Menze, Spyridon Bakas, Diana Waldmannstetter

Registration of longitudinal brain MRI scans containing pathologies is challenging due to dramatic changes in tissue appearance.

Descriptive Image Registration +1

Self-Supervised Representation Learning using Visual Field Expansion on Digital Pathology

1 code implementation7 Sep 2021 Joseph Boyd, Mykola Liashuha, Eric Deutsch, Nikos Paragios, Stergios Christodoulidis, Maria Vakalopoulou

In this study, we propose a novel generative framework that can learn powerful representations for such tiles by learning to plausibly expand their visual field.

Representation Learning

Self-Supervised Nuclei Segmentation in Histopathological Images Using Attention

1 code implementation16 Jul 2020 Mihir Sahasrabudhe, Stergios Christodoulidis, Roberto Salgado, Stefan Michiels, Sherene Loi, Fabrice André, Nikos Paragios, Maria Vakalopoulou

We show that the identification of the magnification level for tiles can generate a preliminary self-supervision signal to locate nuclei.

Segmentation

Self-Attention and Ingredient-Attention Based Model for Recipe Retrieval from Image Queries

no code implementations5 Nov 2019 Matthias Fontanellaz, Stergios Christodoulidis, Stavroula Mougiakakou

Direct computer vision based-nutrient content estimation is a demanding task, due to deformation and occlusions of ingredients, as well as high intra-class and low inter-class variability between meal classes.

Nutrition Retrieval +3

U-ReSNet: Ultimate coupling of Registration and Segmentation with deep Nets

1 code implementation10 Oct 2019 Théo Estienne, Maria Vakalopoulou, Stergios Christodoulidis, Enzo Battistella, Marvin Lerousseau, Alexandre Carre, Guillaume Klausner, Roger Sun, Charlotte Robert, Stavroula Mougiakakou, Nikos Paragios, Eric Deutsch

We evaluated the proposed architecture using the publicly available OASIS 3 dataset, measuring the dice coefficient metric for both registration and segmentation tasks.

Semantic Segmentation of Pathological Lung Tissue with Dilated Fully Convolutional Networks

1 code implementation16 Mar 2018 Marios Anthimopoulos, Stergios Christodoulidis, Lukas Ebner, Thomas Geiser, Andreas Christe, Stavroula Mougiakakou

In this study, we propose the use of a deep purely convolutional neural network for the semantic segmentation of ILD patterns, as the basic component of a computer aided diagnosis (CAD) system for ILDs.

Semantic Segmentation

Multi-source Transfer Learning with Convolutional Neural Networks for Lung Pattern Analysis

no code implementations8 Dec 2016 Stergios Christodoulidis, Marios Anthimopoulos, Lukas Ebner, Andreas Christe, Stavroula Mougiakakou

In a previous study, we proposed a method for classifying lung tissue patterns using a deep convolutional neural network (CNN), with an architecture designed for the specific problem.

Texture Classification Transfer Learning

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