Deep Learning Enabled Time-Lapse 3D Cell Analysis

1 code implementation • 17 Aug 2022 • Jiaxiang Jiang, Amil Khan, S. Shailja, Samuel A. Belteton, Michael Goebel, Daniel B. Szymanski, B. S. Manjunath

This paper presents a method for time-lapse 3D cell analysis.

A computational geometry approach for modeling neuronal fiber pathways

1 code implementation • 2 Aug 2021 • S. Shailja, Angela Zhang, B. S. Manjunath

We develop a computational geometry-based tractography representation that aims to simplify the connectivity of white matter fibers.

Semi supervised segmentation and graph-based tracking of 3D nuclei in time-lapse microscopy

1 code implementation • 26 Oct 2020 • S. Shailja, Jiaxiang Jiang, B. S. Manjunath

We propose a novel weakly supervised method to improve the boundary of the 3D segmented nuclei utilizing an over-segmented image.

Cell Tracking Clustering