3D Neuron Morphology Analysis

no code implementations • 14 Dec 2022 • Jiaxiang Jiang, Michael Goebel, Cezar Borba, William Smith, B. S. Manjunath

A skeleton graph is then obtained from skeleton mesh and is used to extract sub-cellular features.

Deep Learning Enabled Time-Lapse 3D Cell Analysis

1 code implementation • 17 Aug 2022 • Jiaxiang Jiang, Amil Khan, S. Shailja, Samuel A. Belteton, Michael Goebel, Daniel B. Szymanski, B. S. Manjunath

This paper presents a method for time-lapse 3D cell analysis.

Semi supervised segmentation and graph-based tracking of 3D nuclei in time-lapse microscopy

1 code implementation • 26 Oct 2020 • S. Shailja, Jiaxiang Jiang, B. S. Manjunath

We propose a novel weakly supervised method to improve the boundary of the 3D segmented nuclei utilizing an over-segmented image.

Cell Tracking Clustering

Accurate 3D Cell Segmentation using Deep Feature and CRF Refinement

1 code implementation • 13 Feb 2019 • Jiaxiang Jiang, Po-Yu Kao, Samuel A. Belteton, Daniel B. Szymanski, B. S. Manjunath

We consider the problem of accurately identifying cell boundaries and labeling individual cells in confocal microscopy images, specifically, 3D image stacks of cells with tagged cell membranes.

Cell Segmentation Segmentation