Search Results for author: Mingyue Zheng

Found 5 papers, 2 papers with code

MolCRAFT: Structure-Based Drug Design in Continuous Parameter Space

no code implementations18 Apr 2024 Yanru Qu, Keyue Qiu, Yuxuan Song, Jingjing Gong, Jiawei Han, Mingyue Zheng, Hao Zhou, Wei-Ying Ma

Generative models for structure-based drug design (SBDD) have shown promising results in recent years.

Unified Generative Modeling of 3D Molecules via Bayesian Flow Networks

1 code implementation17 Mar 2024 Yuxuan Song, Jingjing Gong, Yanru Qu, Hao Zhou, Mingyue Zheng, Jingjing Liu, Wei-Ying Ma

Advanced generative model (e. g., diffusion model) derived from simplified continuity assumptions of data distribution, though showing promising progress, has been difficult to apply directly to geometry generation applications due to the multi-modality and noise-sensitive nature of molecule geometry.

3D Molecule Generation

Structure-Based Drug Design via 3D Molecular Generative Pre-training and Sampling

no code implementations22 Feb 2024 Yuwei Yang, Siqi Ouyang, Xueyu Hu, Mingyue Zheng, Hao Zhou, Lei LI

We develop a novel 3D graph editing model to generate molecules using fragments, and pre-train this model on abundant 3D ligands for learning target-independent properties.

Molecular Docking Self-Learning

TransformerCPI: improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments

2 code implementations Bioinformatics 2020 Lifan Chen, Xiaoqin Tan, Dingyan Wang, Feisheng Zhong, Xiaohong Liu, Tianbiao Yang, Xiaomin Luo, Kaixian Chen, Hualiang Jiang, Mingyue Zheng

Motivation Identifying compound–protein interaction (CPI) is a crucial task in drug discovery and chemogenomics studies, and proteins without three-dimensional structure account for a large part of potential biological targets, which requires developing methods using only protein sequence information to predict CPI.

Drug Discovery

Cannot find the paper you are looking for? You can Submit a new open access paper.