Search Results for author: Mark A. Anastasio

Found 41 papers, 4 papers with code

ProxNF: Neural Field Proximal Training for High-Resolution 4D Dynamic Image Reconstruction

no code implementations6 Mar 2024 Luke Lozenski, Refik Mert Cam, Mark A. Anastasio, Umberto Villa

Neural fields can address the twin challenges of data incompleteness and computational burden by exploiting underlying redundancies in these spatiotemporal objects.

Image Reconstruction

Technical Note: An Efficient Implementation of the Spherical Radon Transform with Cylindrical Apertures

no code implementations23 Feb 2024 Luke Lozenski, Refik Mert Cam, Mark A. Anastasio, Umberto Villa

The spherical Radon transform (SRT) is an integral transform that maps a function to its integrals over concentric spherical shells centered at specified sensor locations.

Image Reconstruction

Attention-Based CNN-BiLSTM for Sleep State Classification of Spatiotemporal Wide-Field Calcium Imaging Data

1 code implementation16 Jan 2024 Xiaohui Zhang, Eric C. Landsness, Hanyang Miao, Wei Chen, Michelle Tang, Lindsey M. Brier, Joseph P. Culver, Jin-Moo Lee, Mark A. Anastasio

Comparison with Existing Method: On a 3-hour WFCI recording, the CNN-BiLSTM achieved a kappa of 0. 67, comparable to a kappa of 0. 65 corresponding to the human EEG/EMG-based scoring.

EEG

Investigating the Use of Traveltime and Reflection Tomography for Deep Learning-Based Sound-Speed Estimation in Ultrasound Computed Tomography

no code implementations16 Nov 2023 Gangwon Jeong, Fu Li, Umberto Villa, Mark A. Anastasio

Deep learning-based image-to-image learned reconstruction (IILR) methods are being investigated as scalable and computationally efficient alternatives.

Deep learning-based image super-resolution of a novel end-expandable optical fiber probe for application in esophageal cancer diagnostics

no code implementations3 Oct 2023 Xiaohui Zhang, Mimi Tan, Mansour Nabil, Richa Shukla, Shaleen Vasavada, Sharmila Anandasabapathy, Mark A. Anastasio, Elena Petrova

Aim: To improve the efficiency of endoscopic screening, we proposed a novel end-expandable endoscopic optical fiber probe for larger field of visualization and employed a deep learning-based image super-resolution (DL-SR) method to overcome the issue of limited sampling capability.

Image Super-Resolution Specificity

Spatiotemporal Image Reconstruction to Enable High-Frame Rate Dynamic Photoacoustic Tomography with Rotating-Gantry Volumetric Imagers

no code implementations1 Oct 2023 Refik M. Cam, Chao Wang, Weylan Thompson, Sergey A. Ermilov, Mark A. Anastasio, Umberto Villa

Aim: The aim of this study is to develop a spatiotemporal image reconstruction (STIR) method for dynamic PACT that can be applied to commercially available volumetric PACT imagers that employ a sequential scanning strategy.

4D reconstruction Image Reconstruction

Assessing the capacity of a denoising diffusion probabilistic model to reproduce spatial context

no code implementations19 Sep 2023 Rucha Deshpande, Muzaffer Özbey, Hua Li, Mark A. Anastasio, Frank J. Brooks

However, there remains an important need to understand the extent to which DDPMs can reliably learn medical imaging domain-relevant information, which is referred to as `spatial context' in this work.

Data Augmentation Denoising +1

AmbientFlow: Invertible generative models from incomplete, noisy measurements

no code implementations9 Sep 2023 Varun A. Kelkar, Rucha Deshpande, Arindam Banerjee, Mark A. Anastasio

In applications such as computed imaging, it is often difficult to acquire such data due to requirements such as long acquisition time or high radiation dose, while acquiring noisy or partially observed measurements of these objects is more feasible.

Image Reconstruction

High-Dimensional MR Reconstruction Integrating Subspace and Adaptive Generative Models

no code implementations14 Jun 2023 Ruiyang Zhao, Xi Peng, Varun A. Kelkar, Mark A. Anastasio, Fan Lam

We present a novel method that integrates subspace modeling with an adaptive generative image prior for high-dimensional MR image reconstruction.

Image Reconstruction

Ideal Observer Computation by Use of Markov-Chain Monte Carlo with Generative Adversarial Networks

no code implementations2 Apr 2023 Weimin Zhou, Umberto Villa, Mark A. Anastasio

Medical imaging systems are often evaluated and optimized via objective, or task-specific, measures of image quality (IQ) that quantify the performance of an observer on a specific clinically-relevant task.

Generative Adversarial Network

A Test Statistic Estimation-based Approach for Establishing Self-interpretable CNN-based Binary Classifiers

no code implementations13 Mar 2023 Sourya Sengupta, Mark A. Anastasio

The model is trained to estimate the test statistic of the given trained black-box deep binary classifier to maintain a similar accuracy.

Binary Classification Image Classification +2

On the impact of incorporating task-information in learning-based image denoising

no code implementations23 Nov 2022 Kaiyan Li, Hua Li, Mark A. Anastasio

The task-component was designed to measure the performance of a numerical observer (NO) on a signal detection task.

Computed Tomography (CT) Image Denoising +2

Investigating the robustness of a learning-based method for quantitative phase retrieval from propagation-based x-ray phase contrast measurements under laboratory conditions

no code implementations2 Nov 2022 Rucha Deshpande, Ashish Avachat, Frank J. Brooks, Mark A. Anastasio

In this work, a LBM was assessed for its applicability under practical scenarios by evaluating its robustness and generalizability under typical experimental variations.

Object Retrieval

A Memory-Efficient Dynamic Image Reconstruction Method using Neural Fields

no code implementations11 May 2022 Luke Lozenski, Mark A. Anastasio, Umberto Villa

Computational and memory requirements are particularly burdensome for three-dimensional dynamic imaging applications requiring high resolution in both space and time.

Image Reconstruction Object

Assessing the ability of generative adversarial networks to learn canonical medical image statistics

no code implementations26 Apr 2022 Varun A. Kelkar, Dimitrios S. Gotsis, Frank J. Brooks, Prabhat KC, Kyle J. Myers, Rongping Zeng, Mark A. Anastasio

In recent years, generative adversarial networks (GANs) have gained tremendous popularity for potential applications in medical imaging, such as medical image synthesis, restoration, reconstruction, translation, as well as objective image quality assessment.

Image Generation Image Quality Assessment +1

Application of DatasetGAN in medical imaging: preliminary studies

no code implementations27 Feb 2022 Zong Fan, Varun Kelkar, Mark A. Anastasio, Hua Li

Generative adversarial networks (GANs) have been widely investigated for many potential applications in medical imaging.

Image Segmentation Segmentation +1

Prior image-based medical image reconstruction using a style-based generative adversarial network

no code implementations17 Feb 2022 Varun A. Kelkar, Mark A. Anastasio

Discrepancy between the sought-after and prior images is measured in the disentangled latent-space, and is used to regularize the inverse problem in the form of constraints on specific styles of the disentangled latent-space.

Generative Adversarial Network Image Reconstruction +1

Mining the manifolds of deep generative models for multiple data-consistent solutions of ill-posed tomographic imaging problems

1 code implementation10 Feb 2022 Sayantan Bhadra, Umberto Villa, Mark A. Anastasio

In this work, a new empirical sampling method is proposed that computes multiple solutions of a tomographic inverse problem that are consistent with the same acquired measurement data.

Generative Adversarial Network Stochastic Optimization +2

A Method for Evaluating Deep Generative Models of Images via Assessing the Reproduction of High-order Spatial Context

no code implementations24 Nov 2021 Rucha Deshpande, Mark A. Anastasio, Frank J. Brooks

We designed several stochastic context models (SCMs) of distinct image features that can be recovered after generation by a trained GAN.

A Hybrid Approach for Approximating the Ideal Observer for Joint Signal Detection and Estimation Tasks by Use of Supervised Learning and Markov-Chain Monte Carlo Methods

no code implementations22 Oct 2021 Kaiyan Li, Weimin Zhou, Hua Li, Mark A. Anastasio

Specifically, a hybrid approach is developed that combines a multi-task convolutional neural network and a Markov-Chain Monte Carlo (MCMC) method in order to approximate the IO for detection-estimation tasks.

Impact of deep learning-based image super-resolution on binary signal detection

no code implementations6 Jul 2021 Xiaohui Zhang, Varun A. Kelkar, Jason Granstedt, Hua Li, Mark A. Anastasio

The presented study highlights the urgent need for the objective assessment of DL-SR methods and suggests avenues for improving their efficacy in medical imaging applications.

Generative Adversarial Network Image Super-Resolution

Learning stochastic object models from medical imaging measurements by use of advanced ambient generative adversarial networks

no code implementations27 Jun 2021 Weimin Zhou, Sayantan Bhadra, Frank J. Brooks, Hua Li, Mark A. Anastasio

AmbientGANs established using the proposed training procedure are systematically validated in a controlled way using computer-simulated magnetic resonance imaging (MRI) data corresponding to a stylized imaging system.

Generative Adversarial Network

Assessing the Impact of Deep Neural Network-based Image Denoising on Binary Signal Detection Tasks

no code implementations28 Apr 2021 Kaiyan Li, Weimin Zhou, Hua Li, Mark A. Anastasio

The performance of the ideal observer (IO) and common linear numerical observers are quantified and detection efficiencies are computed to assess the impact of the denoising operation on task performance.

Image Denoising

Prior Image-Constrained Reconstruction using Style-Based Generative Models

1 code implementation24 Feb 2021 Varun A. Kelkar, Mark A. Anastasio

Obtaining a useful estimate of an object from highly incomplete imaging measurements remains a holy grail of imaging science.

Object

Advancing the AmbientGAN for learning stochastic object models

no code implementations30 Jan 2021 Weimin Zhou, Sayantan Bhadra, Frank J. Brooks, Jason L. Granstedt, Hua Li, Mark A. Anastasio

Medical imaging systems are commonly assessed and optimized by use of objective-measures of image quality (IQ) that quantify the performance of an observer at specific tasks.

Generative Adversarial Network Object

On hallucinations in tomographic image reconstruction

3 code implementations1 Dec 2020 Sayantan Bhadra, Varun A. Kelkar, Frank J. Brooks, Mark A. Anastasio

The behavior of different reconstruction methods under the proposed formalism is discussed with the help of the numerical studies.

Hallucination Image Reconstruction

Compressible Latent-Space Invertible Networks for Generative Model-Constrained Image Reconstruction

no code implementations5 Jul 2020 Varun A. Kelkar, Sayantan Bhadra, Mark A. Anastasio

To circumvent this problem, in this work, a framework for reconstructing images from incomplete measurements is proposed that is formulated in the latent space of invertible neural network-based generative models.

Image Reconstruction

Learning stochastic object models from medical imaging measurements using Progressively-Growing AmbientGANs

no code implementations29 May 2020 Weimin Zhou, Sayantan Bhadra, Frank J. Brooks, Hua Li, Mark A. Anastasio

To circumvent this, in this work, a new Progressive Growing AmbientGAN (ProAmGAN) strategy is developed for establishing SOMs from medical imaging measurements.

Approximating the Ideal Observer for joint signal detection and localization tasks by use of supervised learning methods

no code implementations29 May 2020 Weimin Zhou, Hua Li, Mark A. Anastasio

When joint signal detection and localization tasks are considered, the IO that employs a modified generalized likelihood ratio test maximizes observer performance as characterized by the localization receiver operating characteristic (LROC) curve.

Approximating the Hotelling Observer with Autoencoder-Learned Efficient Channels for Binary Signal Detection Tasks

no code implementations4 Mar 2020 Jason L. Granstedt, Weimin Zhou, Mark A. Anastasio

Overall, AEs are demonstrated to be competitive with state-of-the-art methods for generating efficient channels for the HO and can have superior performance on small datasets.

Image Quality Assessment

Learning Numerical Observers using Unsupervised Domain Adaptation

no code implementations3 Feb 2020 Shenghua He, Weimin Zhou, Hua Li, Mark A. Anastasio

In this study, we propose and investigate the use of an adversarial domain adaptation method to mitigate the deleterious effects of domain shift between simulated and experimental image data for deep learning-based numerical observers (DL-NOs) that are trained on simulated images but applied to experimental ones.

Image Quality Assessment Unsupervised Domain Adaptation

Markov-Chain Monte Carlo Approximation of the Ideal Observer using Generative Adversarial Networks

no code implementations26 Jan 2020 Weimin Zhou, Mark A. Anastasio

To approximate the IO test statistic, sampling-based methods that employ Markov-Chain Monte Carlo (MCMC) techniques have been developed.

Object

Progressively-Growing AmbientGANs For Learning Stochastic Object Models From Imaging Measurements

no code implementations26 Jan 2020 Weimin Zhou, Sayantan Bhadra, Frank J. Brooks, Hua Li, Mark A. Anastasio

However, because medical imaging systems record imaging measurements that are noisy and indirect representations of object properties, GANs cannot be directly applied to establish stochastic models of objects to-be-imaged.

Object

Approximating the Ideal Observer and Hotelling Observer for binary signal detection tasks by use of supervised learning methods

no code implementations15 May 2019 Weimin Zhou, Hua Li, Mark A. Anastasio

For binary signal detection tasks, the Bayesian Ideal Observer (IO) sets an upper limit of observer performance and has been advocated for use in optimizing medical imaging systems and data-acquisition designs.

Reconstruction-Aware Imaging System Ranking by use of a Sparsity-Driven Numerical Observer Enabled by Variational Bayesian Inference

no code implementations14 May 2019 Yujia Chen, Yang Lou, Kun Wang, Matthew A. Kupinski, Mark A. Anastasio

In this work, a sparsity-driven observer (SDO) that can be employed to optimize hardware by use of a stochastic object model describing object sparsity is described and investigated.

Bayesian Inference Compressive Sensing +1

Deep Learning-Guided Image Reconstruction from Incomplete Data

no code implementations2 Sep 2017 Brendan Kelly, Thomas P. Matthews, Mark A. Anastasio

The CNN is trained to encode high level information about the class of images being imaged; this information is utilized to mitigate artifacts in intermediate images produced by use of an iterative method.

Image Reconstruction

Cannot find the paper you are looking for? You can Submit a new open access paper.