Search Results for author: Le Ou-Yang

Found 6 papers, 2 papers with code

ETDock: A Novel Equivariant Transformer for Protein-Ligand Docking

no code implementations12 Oct 2023 Yiqiang Yi, Xu Wan, Yatao Bian, Le Ou-Yang, Peilin Zhao

Predicting the docking between proteins and ligands is a crucial and challenging task for drug discovery.

Drug Discovery Pose Prediction

Predicting Protein-Ligand Binding Affinity with Equivariant Line Graph Network

no code implementations27 Oct 2022 Yiqiang Yi, Xu Wan, Kangfei Zhao, Le Ou-Yang, Peilin Zhao

The proposed ELGN firstly adds a super node to the 3D complex, and then builds a line graph based on the 3D complex.

MARS: A Motif-based Autoregressive Model for Retrosynthesis Prediction

no code implementations27 Sep 2022 Jiahan Liu, Chaochao Yan, Yang Yu, Chan Lu, Junzhou Huang, Le Ou-Yang, Peilin Zhao

In this paper, we propose a novel end-to-end graph generation model for retrosynthesis prediction, which sequentially identifies the reaction center, generates the synthons, and adds motifs to the synthons to generate reactants.

Drug Discovery Graph Generation +1

Recent Advances in Network-based Methods for Disease Gene Prediction

1 code implementation19 Jul 2020 Sezin Kircali Ata, Min Wu, Yuan Fang, Le Ou-Yang, Chee Keong Kwoh, Xiao-Li Li

Thirdly, an empirical analysis is conducted to evaluate the performance of the selected methods across seven diseases.

Graph Representation Learning

Microbial community pattern detection in human body habitats via ensemble clustering framework

no code implementations21 Dec 2014 Peng Yang, Xiaoquan Su, Le Ou-Yang, Hon-Nian Chua, Xiao-Li Li, Kang Ning

To obtain a comprehensive view, we propose a novel ensemble clustering framework to mine the structure of microbial community pattern on large-scale metagenomic data.

Clustering

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