Search Results for author: Jeffrey A. Fessler

Found 38 papers, 13 papers with code

Streaming Probabilistic PCA for Missing Data with Heteroscedastic Noise

no code implementations10 Oct 2023 Kyle Gilman, David Hong, Jeffrey A. Fessler, Laura Balzano

Streaming principal component analysis (PCA) is an integral tool in large-scale machine learning for rapidly estimating low-dimensional subspaces of very high dimensional and high arrival-rate data with missing entries and corrupting noise.

Astronomy

ALPCAH: Sample-wise Heteroscedastic PCA with Tail Singular Value Regularization

1 code implementation6 Jul 2023 Javier Salazar Cavazos, Jeffrey A. Fessler, Laura Balzano

Other methods such as Weighted PCA (WPCA) assume the noise variances are known, which may be difficult to know in practice.

Dimensionality Reduction

Dynamic Subspace Estimation with Grassmannian Geodesics

no code implementations26 Mar 2023 Cameron J. Blocker, Haroon Raja, Jeffrey A. Fessler, Laura Balzano

We propose a novel algorithm for minimizing this objective and estimating the parameters of the model from data with Grassmannian-constrained optimization.

Adaptive Sampling for Linear Sensing Systems via Langevin Dynamics

no code implementations27 Feb 2023 Guanhua Wang, Douglas C. Noll, Jeffrey A. Fessler

Adaptive or dynamic signal sampling in sensing systems can adapt subsequent sampling strategies based on acquired signals, thereby potentially improving image quality and speed.

HeMPPCAT: Mixtures of Probabilistic Principal Component Analysers for Data with Heteroscedastic Noise

no code implementations21 Jan 2023 Alec S. Xu, Laura Balzano, Jeffrey A. Fessler

Mixtures of probabilistic principal component analysis (MPPCA) is a well-known mixture model extension of principal component analysis (PCA).

Clustering

Sparse-view Cone Beam CT Reconstruction using Data-consistent Supervised and Adversarial Learning from Scarce Training Data

no code implementations23 Jan 2022 Anish Lahiri, Marc Klasky, Jeffrey A. Fessler, Saiprasad Ravishankar

This work focuses on image reconstruction in such settings, i. e., when both the number of available CT projections and the training data is extremely limited.

3D Reconstruction Image Reconstruction

Efficient approximation of Jacobian matrices involving a non-uniform fast Fourier transform (NUFFT)

2 code implementations4 Nov 2021 Guanhua Wang, Jeffrey A. Fessler

In fact, we show that model-based image reconstruction (MBIR) methods with suitably optimized imaging parameters can perform nearly as well as CNN-based methods.

Image Reconstruction Stochastic Optimization

Manifold Model for High-Resolution fMRI Joint Reconstruction and Dynamic Quantification

no code implementations16 Apr 2021 Shouchang Guo, Jeffrey A. Fessler, Douglas C. Noll

Oscillating Steady-State Imaging (OSSI) is a recent fMRI acquisition method that exploits a large and oscillating signal, and can provide high SNR fMRI.

Vocal Bursts Intensity Prediction

Blind Primed Supervised (BLIPS) Learning for MR Image Reconstruction

2 code implementations11 Apr 2021 Anish Lahiri, Guanhua Wang, Saiprasad Ravishankar, Jeffrey A. Fessler

We also compare the proposed method to alternative approaches for combining dictionary-based methods with supervised learning in MR image reconstruction.

Dictionary Learning Image Reconstruction

B-spline Parameterized Joint Optimization of Reconstruction and K-space Trajectories (BJORK) for Accelerated 2D MRI

2 code implementations27 Jan 2021 Guanhua Wang, Tianrui Luo, Jon-Fredrik Nielsen, Douglas C. Noll, Jeffrey A. Fessler

Though trained with neural network-based reconstruction, the proposed trajectory also leads to improved image quality with compressed sensing-based reconstruction.

Image Reconstruction

Joint Design of RF and gradient waveforms via auto-differentiation for 3D tailored excitation in MRI

2 code implementations24 Aug 2020 Tianrui Luo, Douglas C. Noll, Jeffrey A. Fessler, Jon-Fredrik Nielsen

This paper proposes a new method for joint design of radiofrequency (RF) and gradient waveforms in Magnetic Resonance Imaging (MRI), and applies it to the design of 3D spatially tailored saturation and inversion pulses.

Computational Efficiency

BCD-Net for Low-dose CT Reconstruction: Acceleration, Convergence, and Generalization

no code implementations4 Aug 2019 Il Yong Chun, Xuehang Zheng, Yong Long, Jeffrey A. Fessler

Numerical results with phantom data show that applying faster numerical solvers to model-based image reconstruction (MBIR) modules of BCD-Net leads to faster and more accurate BCD-Net; BCD-Net significantly improves the reconstruction accuracy, compared to the state-of-the-art MBIR method using learned transforms; BCD-Net achieves better image quality, compared to a state-of-the-art iterative NN architecture, ADMM-Net.

Computed Tomography (CT) Image Reconstruction +1

Momentum-Net: Fast and convergent iterative neural network for inverse problems

no code implementations26 Jul 2019 Il Yong Chun, Zhengyu Huang, Hongki Lim, Jeffrey A. Fessler

Iterative neural networks (INN) are rapidly gaining attention for solving inverse problems in imaging, image processing, and computer vision.

Image Reconstruction regression

Improved low-count quantitative PET reconstruction with an iterative neural network

1 code implementation5 Jun 2019 Hongki Lim, Il Yong Chun, Yuni K. Dewaraja, Jeffrey A. Fessler

Image reconstruction in low-count PET is particularly challenging because gammas from natural radioactivity in Lu-based crystals cause high random fractions that lower the measurement signal-to-noise-ratio (SNR).

Image Reconstruction

Image Reconstruction: From Sparsity to Data-adaptive Methods and Machine Learning

no code implementations4 Apr 2019 Saiprasad Ravishankar, Jong Chul Ye, Jeffrey A. Fessler

This paper focuses on the two most recent trends in medical image reconstruction: methods based on sparsity or low-rank models, and data-driven methods based on machine learning techniques.

BIG-bench Machine Learning Computed Tomography (CT) +1

Convolutional Analysis Operator Learning: Dependence on Training Data

3 code implementations21 Feb 2019 Il Yong Chun, David Hong, Ben Adcock, Jeffrey A. Fessler

Convolutional analysis operator learning (CAOL) enables the unsupervised training of (hierarchical) convolutional sparsifying operators or autoencoders from large datasets.

Open-Ended Question Answering Operator learning

DECT-MULTRA: Dual-Energy CT Image Decomposition With Learned Mixed Material Models and Efficient Clustering

no code implementations1 Jan 2019 Zhipeng Li, Saiprasad Ravishankar, Yong Long, Jeffrey A. Fessler

Dual energy computed tomography (DECT) imaging plays an important role in advanced imaging applications due to its material decomposition capability.

Clustering

Fast, Precise Myelin Water Quantification using DESS MRI and Kernel Learning

1 code implementation24 Sep 2018 Gopal Nataraj, Jon-Fredrik Nielsen, Mingjie Gao, Jeffrey A. Fessler

In vivo and ex vivo experiments demonstrate that MESE MWF and DESS PERK ff estimates are quantitatively comparable measures of WM myelin water content.

Online Adaptive Image Reconstruction (OnAIR) Using Dictionary Models

no code implementations6 Sep 2018 Brian E. Moore, Saiprasad Ravishankar, Raj Rao Nadakuditi, Jeffrey A. Fessler

Sparsity and low-rank models have been popular for reconstructing images and videos from limited or corrupted measurements.

Denoising Image Reconstruction +1

SPULTRA: Low-Dose CT Image Reconstruction with Joint Statistical and Learned Image Models

1 code implementation27 Aug 2018 Siqi Ye, Saiprasad Ravishankar, Yong Long, Jeffrey A. Fessler

The SPULTRA algorithm has a similar computational cost per iteration as its recent counterpart PWLS-ULTRA that uses post-log measurements, and it provides better image reconstruction quality than PWLS-ULTRA, especially in low-dose scans.

Signal Processing Image and Video Processing Optimization and Control Medical Physics

Deep BCD-Net Using Identical Encoding-Decoding CNN Structures for Iterative Image Recovery

no code implementations20 Feb 2018 Il Yong Chun, Jeffrey A. Fessler

In "extreme" computational imaging that collects extremely undersampled or noisy measurements, obtaining an accurate image within a reasonable computing time is challenging.

Denoising

Convolutional Analysis Operator Learning: Acceleration and Convergence

5 code implementations15 Feb 2018 Il Yong Chun, Jeffrey A. Fessler

This paper proposes a new convolutional analysis operator learning (CAOL) framework that learns an analysis sparsifying regularizer with the convolution perspective, and develops a new convergent Block Proximal Extrapolated Gradient method using a Majorizer (BPEG-M) to solve the corresponding block multi-nonconvex problems.

Dictionary Learning Operator learning

Sparse-View X-Ray CT Reconstruction Using $\ell_1$ Prior with Learned Transform

no code implementations2 Nov 2017 Xuehang Zheng, Il Yong Chun, Zhipeng Li, Yong Long, Jeffrey A. Fessler

Our results with the extended cardiac-torso (XCAT) phantom data and clinical chest data show that, for sparse-view 2D fan-beam CT and 3D axial cone-beam CT, PWLS-ST-$\ell_1$ improves the quality of reconstructed images compared to the CT reconstruction methods using edge-preserving regularizer and $\ell_2$ prior with learned ST.

Computed Tomography (CT) Denoising +1

Dictionary-Free MRI PERK: Parameter Estimation via Regression with Kernels

no code implementations6 Oct 2017 Gopal Nataraj, Jon-Fredrik Nielsen, Clayton Scott, Jeffrey A. Fessler

This paper introduces a fast, general method for dictionary-free parameter estimation in quantitative magnetic resonance imaging (QMRI) via regression with kernels (PERK).

regression

Medical image reconstruction: a brief overview of past milestones and future directions

no code implementations19 Jul 2017 Jeffrey A. Fessler

This paper briefly reviews past milestones in the field of medical image reconstruction and describes some future directions.

Medical Physics

Low Dose CT Image Reconstruction With Learned Sparsifying Transform

no code implementations10 Jul 2017 Xuehang Zheng, Zening Lu, Saiprasad Ravishankar, Yong Long, Jeffrey A. Fessler

A major challenge in computed tomography (CT) is to reduce X-ray dose to a low or even ultra-low level while maintaining the high quality of reconstructed images.

Computed Tomography (CT) Image Reconstruction

Convolutional Dictionary Learning: Acceleration and Convergence

1 code implementation3 Jul 2017 Il Yong Chun, Jeffrey A. Fessler

However, the parameter tuning process is not trivial due to its data dependence and, in practice, the convergence of AL methods depends on the AL parameters for nonconvex CDL problems.

Dictionary Learning Image Denoising

PWLS-ULTRA: An Efficient Clustering and Learning-Based Approach for Low-Dose 3D CT Image Reconstruction

1 code implementation27 Mar 2017 Xuehang Zheng, Saiprasad Ravishankar, Yong Long, Jeffrey A. Fessler

PWLS with regularization based on a union of learned transforms leads to better image reconstructions than using a single learned square transform.

Clustering Computed Tomography (CT) +1

Low-rank and Adaptive Sparse Signal (LASSI) Models for Highly Accelerated Dynamic Imaging

no code implementations13 Nov 2016 Saiprasad Ravishankar, Brian E. Moore, Raj Rao Nadakuditi, Jeffrey A. Fessler

For example, the patches of the underlying data are modeled as sparse in an adaptive dictionary domain, and the resulting image and dictionary estimation from undersampled measurements is called dictionary-blind compressed sensing, or the dynamic image sequence is modeled as a sum of low-rank and sparse (in some transform domain) components (L+S model) that are estimated from limited measurements.

Image Reconstruction

Relaxed Linearized Algorithms for Faster X-Ray CT Image Reconstruction

no code implementations14 Dec 2015 Hung Nien, Jeffrey A. Fessler

Statistical image reconstruction (SIR) methods are studied extensively for X-ray computed tomography (CT) due to the potential of acquiring CT scans with reduced X-ray dose while maintaining image quality.

Computed Tomography (CT) Image Reconstruction

Efficient Sum of Outer Products Dictionary Learning (SOUP-DIL) and Its Application to Inverse Problems

1 code implementation19 Nov 2015 Saiprasad Ravishankar, Raj Rao Nadakuditi, Jeffrey A. Fessler

This paper exploits the ideas that drive algorithms such as K-SVD, and investigates in detail efficient methods for aggregate sparsity penalized dictionary learning by first approximating the data with a sum of sparse rank-one matrices (outer products) and then using a block coordinate descent approach to estimate the unknowns.

Denoising Dictionary Learning +1

A convergence proof of the split Bregman method for regularized least-squares problems

no code implementations18 Feb 2014 Hung Nien, Jeffrey A. Fessler

According to our analysis, we can show that the two-split ADMM algorithm can be faster than the SB method if the AL penalty parameter of the SB method is suboptimal.

Computed Tomography (CT) Image Reconstruction +1

Fast X-ray CT image reconstruction using the linearized augmented Lagrangian method with ordered subsets

no code implementations18 Feb 2014 Hung Nien, Jeffrey A. Fessler

The augmented Lagrangian (AL) method that solves convex optimization problems with linear constraints has drawn more attention recently in imaging applications due to its decomposable structure for composite cost functions and empirical fast convergence rate under weak conditions.

Computed Tomography (CT) Image Reconstruction

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