no code implementations • 19 May 2023 • Thomaz F. S. Bastiaanssen, Thomas P. Quinn, Amy Loughman
In this companion piece to Bugs as Features (part I), we present techniques from adjacent and disparate fields to enrich and inform the analysis of microbiome-gut-brain-axis data.
1 code implementation • 18 May 2023 • Thomaz F. S. Bastiaanssen, Thomas P. Quinn, John F. Cryan
We further extend our framework beyond pairwise association testing to differential association testing, and show how anansi can be used to identify associations that differ in strength or degree based on sample covariates such as case/control status.
no code implementations • 25 Jul 2022 • Thomaz F. S. Bastiaanssen, Thomas P. Quinn, Amy Loughman
There has been a growing acknowledgement of the involvement of the gut microbiome - the collection of microbes that reside in our gut - in regulating our mood and behaviour.