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Found 5 papers, 0 papers with code
ODEbase: A Repository of ODE Systems for Systems Biology
Recently, symbolic computation and computer algebra systems have been successfully applied in systems biology, especially in chemical reaction network theory.
Testing Binomiality of Chemical Reaction Networks Using Comprehensive Gröbner Systems
We consider the problem of binomiality of the steady state ideals of biochemical reaction networks.
Parametric Toricity of Steady State Varieties of Reaction Networks
While toricity requires that the variety specifies a subgroup of the direct power of the multiplicative group of the underlying field, shifted toricity requires only a coset.
Algorithmic Reduction of Biological Networks With Multiple Time Scales
We present a symbolic algorithmic approach that allows to compute invariant manifolds and corresponding reduced systems for differential equations modeling biological networks which comprise chemical reaction networks for cellular biochemistry, and compartmental models for pharmacology, epidemiology and ecology.
Efficiently and Effectively Recognizing Toricity of Steady State Varieties
We present algorithms and computations on 129 models from the BioModels repository testing for group and coset structures over both the complex numbers and the real numbers.
