no code implementations • 3 Mar 2024 • Harihara Subrahmaniam Muralidharan, Jacquelyn S Michaelis, Jay Ghurye, Todd Treangen, Sergey Koren, Marcus Fedarko, Mihai Pop
Sequence differences between the strains of bacteria comprising host-associated and environmental microbiota may play a role in community assembly and influence the resilience of microbial communities to disturbances.
no code implementations • 3 Mar 2024 • Tu Luan, Victoria Cepeda, Bo Liu, Zac Bowen, Ujjwal Ayyangar, Mathieu Almeida, Christopher M. Hill, Sergey Koren, Todd J. Treangen, Adam Porter, Mihai Pop
Metagenomic studies have primarily relied on de novo assembly for reconstructing genes and genomes from microbial mixtures.
1 code implementation • 6 Jun 2023 • Haoyu Cheng, Mobin Asri, Julian Lucas, Sergey Koren, Heng Li
Despite recent advances in the length and the accuracy of long-read data, building haplotype-resolved genome assemblies from telomere to telomere still requires considerable computational resources.
