no code implementations • 7 Dec 2021 • Serafim Batzoglou
I present the proof of Goedel's First Incompleteness theorem in an intuitive manner, while covering all technically challenging steps.
4 code implementations • A Cell Press journal 2019 • Kishore Jaganathan, Sofia Kyriazopoulou Panagiotopoulou, Jeremy F. McRae, Siavash Fazel Darbandi, David Knowles, Yang I. Li, Jack A. Kosmicki, Juan Arbelaez, Wenwu Cui, Grace B. Schwartz, Eric D. Chow, Efstathios Kanterakis, Hong Gao, Amirali Kia, Serafim Batzoglou, Stephan J. Sanders, Kyle Kai-How Farh
The splicing of pre-mRNAs into mature transcripts is remarkable for its precision, but the mechanisms by which the cellular machinery achieves such specificity are incompletely understood.
no code implementations • 9 May 2018 • Bo Wang, Armin Pourshafeie, Marinka Zitnik, Junjie Zhu, Carlos D. Bustamante, Serafim Batzoglou, Jure Leskovec
Networks are ubiquitous in biology where they encode connectivity patterns at all scales of organization, from molecular to the biome.
1 code implementation • 21 Mar 2017 • Bo Wang, Daniele Ramazzotti, Luca De Sano, Junjie Zhu, Emma Pierson, Serafim Batzoglou
We here present SIMLR (Single-cell Interpretation via Multi-kernel LeaRning), an open-source tool that implements a novel framework to learn a sample-to-sample similarity measure from expression data observed for heterogenous samples.
no code implementations • NeurIPS 2016 • Bo Wang, Junjie Zhu, Armin Pourshafeie, Oana Ursu, Serafim Batzoglou, Anshul Kundaje
In this paper, we propose an optimization framework to mine useful structures from noisy networks in an unsupervised manner.