Thermodynamic constraints on the assembly and diversity of microbial ecosystems are different near to and far from equilibrium

no code implementations • 16 Nov 2021 • Jacob Cook, Samraat Pawar, Robert G. Endres

Using this model, we find that community diversity increases with substrate lability, because greater free-energy availability allows for faster generation of niches.

Comments on "Towards Unambiguous Edge Bundling: Investigating Confluent Drawings for Network Visualization"

1 code implementation • 23 Oct 2018 • Jonathan X. Zheng, Samraat Pawar, Dan F. M. Goodman

Bach et al. [1] recently presented an algorithm for constructing confluent drawings, by leveraging power graph decomposition to generate an auxiliary routing graph.

Computational Geometry

Graph Drawing by Stochastic Gradient Descent

3 code implementations • 12 Oct 2017 • Jonathan X. Zheng, Samraat Pawar, Dan F. M. Goodman

A popular method of force-directed graph drawing is multidimensional scaling using graph-theoretic distances as input.

Computational Geometry