Search Results for author: Quan Zou

Found 7 papers, 3 papers with code

SBSM-Pro: Support Bio-sequence Machine for Proteins

1 code implementation20 Aug 2023 Yizheng Wang, Yixiao Zhai, Yijie Ding, Quan Zou

We introduce the Support Bio-Sequence Machine for Proteins (SBSM-Pro), a model purpose-built for the classification of biological sequences.

Classification

iDNA-ABF: multi-scale deep biological language learning model for the interpretable prediction of DNA methylations

2 code implementations Genome Biology 2022 Junru Jin, Yingying Yu, Ruheng Wang, Xin Zeng, Chao Pang, Yi Jiang, Zhongshen Li, Yutong Dai, Ran Su, Quan Zou, Kenta Nakai, Leyi Wei

In this study, we propose iDNA-ABF, a multi-scale deep biological language learning model that enables the interpretable prediction of DNA methylations based on genomic sequences only.

Benchmarking Text Classification

Reference-Based Sequence Classification

no code implementations17 May 2019 Zengyou He, Guangyao Xu, Chaohua Sheng, Bo Xu, Quan Zou

By utilizing this framework as a tool, we propose new sequence classification algorithms that are quite different from existing solutions.

Classification General Classification

Instance-Based Classification through Hypothesis Testing

no code implementations3 Jan 2019 Zengyou He, Chaohua Sheng, Yan Liu, Quan Zou

After these two steps, we have two p-values for each test instance and the test instance is assigned to the class associated with the smaller p-value.

Binary Classification Classification +2

Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy

no code implementations7 Mar 2017 Quan Zou, Shixiang Wan, Ying Ju, Jijun Tang, Xiangxiang Zeng

TATA-binding protein (TBP) is a kind of DNA binding protein, which plays a key role in the transcription regulation.

Dimensionality Reduction

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