no code implementations • 23 Feb 2024 • Hubert Wagner, Nickolas Arustamyan, Matthew Wheeler, Peter Bubenik
In particular, we introduce: (1) a mixup barcode, which captures geometric-topological interactions (mixup) between two point sets in arbitrary dimension; (2) simple summary statistics, total mixup and total percentage mixup, which quantify the complexity of the interactions as a single number; (3) a software tool for playing with the above.
no code implementations • 19 Oct 2021 • Matthew Wheeler, Jose Bouza, Peter Bubenik
We use topological data analysis (TDA) to study how data transforms as it passes through successive layers of a deep neural network (DNN).
1 code implementation • 18 Feb 2021 • Ashleigh Thomas, Kathleen Bates, Alex Elchesen, Iryna Hartsock, Hang Lu, Peter Bubenik
We apply topological data analysis to the behavior of C. elegans, a widely-studied model organism in biology.
Time Series Analysis Topological Data Analysis Algebraic Topology Quantitative Methods 55N31 (Primary), 62R40 (Secondary)
no code implementations • 30 May 2019 • Peter Bubenik, Michael Hull, Dhruv Patel, Benjamin Whittle
We describe a general computational framework for solving inverse problems using the average persistence landscape, a continuous mapping from metric spaces with a probability measure to a Hilbert space.
no code implementations • 11 May 2019 • Peter Bubenik, Alexander Wagner
We show that persistence diagrams with the bottleneck distance do not even admit a coarse embedding into a Hilbert space.
no code implementations • 29 Apr 2019 • Leo Betthauser, Peter Bubenik, Parker B. Edwards
The sum of the graded persistence diagrams is the persistence diagram.
Algebraic Topology 55N31, 06A07
1 code implementation • 11 Oct 2018 • Peter Bubenik
We introduce a weighted version of the persistence landscape and define a one-parameter family of Poisson-weighted persistence landscape kernels that may be useful for learning.
no code implementations • 26 Apr 2018 • Vic Patrangenaru, Peter Bubenik, Robert L. Paige, Daniel Osborne
We also describe the first steps to a new approach to using topology for object data analysis, which applies topology to distributions on object spaces.
Methodology Algebraic Topology
1 code implementation • 31 Dec 2014 • Peter Bubenik, Pawel Dlotko
These are intended to facilitate the combination of statistics and machine learning with topological data analysis.
Computational Geometry Mathematical Software Algebraic Topology Computation
no code implementations • 27 Jul 2012 • Peter Bubenik
We define a new topological summary for data that we call the persistence landscape.
Algebraic Topology Computational Geometry Metric Geometry Statistics Theory Statistics Theory 55N99, 68W30, 62G99, 54E35