Search Results for author: Peter Bubenik

Found 10 papers, 3 papers with code

Mixup Barcodes: Quantifying Geometric-Topological Interactions between Point Clouds

no code implementations23 Feb 2024 Hubert Wagner, Nickolas Arustamyan, Matthew Wheeler, Peter Bubenik

In particular, we introduce: (1) a mixup barcode, which captures geometric-topological interactions (mixup) between two point sets in arbitrary dimension; (2) simple summary statistics, total mixup and total percentage mixup, which quantify the complexity of the interactions as a single number; (3) a software tool for playing with the above.

Disentanglement

Activation Landscapes as a Topological Summary of Neural Network Performance

no code implementations19 Oct 2021 Matthew Wheeler, Jose Bouza, Peter Bubenik

We use topological data analysis (TDA) to study how data transforms as it passes through successive layers of a deep neural network (DNN).

Topological Data Analysis

Topological data analysis of C. elegans locomotion and behavior

1 code implementation18 Feb 2021 Ashleigh Thomas, Kathleen Bates, Alex Elchesen, Iryna Hartsock, Hang Lu, Peter Bubenik

We apply topological data analysis to the behavior of C. elegans, a widely-studied model organism in biology.

Time Series Analysis Topological Data Analysis Algebraic Topology Quantitative Methods 55N31 (Primary), 62R40 (Secondary)

Persistent homology detects curvature

no code implementations30 May 2019 Peter Bubenik, Michael Hull, Dhruv Patel, Benjamin Whittle

We describe a general computational framework for solving inverse problems using the average persistence landscape, a continuous mapping from metric spaces with a probability measure to a Hilbert space.

Topological Data Analysis

Embeddings of Persistence Diagrams into Hilbert Spaces

no code implementations11 May 2019 Peter Bubenik, Alexander Wagner

We show that persistence diagrams with the bottleneck distance do not even admit a coarse embedding into a Hilbert space.

Graded persistence diagrams and persistence landscapes

no code implementations29 Apr 2019 Leo Betthauser, Peter Bubenik, Parker B. Edwards

The sum of the graded persistence diagrams is the persistence diagram.

Algebraic Topology 55N31, 06A07

The persistence landscape and some of its properties

1 code implementation11 Oct 2018 Peter Bubenik

We introduce a weighted version of the persistence landscape and define a one-parameter family of Poisson-weighted persistence landscape kernels that may be useful for learning.

Topological Data Analysis for Object Data

no code implementations26 Apr 2018 Vic Patrangenaru, Peter Bubenik, Robert L. Paige, Daniel Osborne

We also describe the first steps to a new approach to using topology for object data analysis, which applies topology to distributions on object spaces.

Methodology Algebraic Topology

A persistence landscapes toolbox for topological statistics

1 code implementation31 Dec 2014 Peter Bubenik, Pawel Dlotko

These are intended to facilitate the combination of statistics and machine learning with topological data analysis.

Computational Geometry Mathematical Software Algebraic Topology Computation

Statistical topological data analysis using persistence landscapes

no code implementations27 Jul 2012 Peter Bubenik

We define a new topological summary for data that we call the persistence landscape.

Algebraic Topology Computational Geometry Metric Geometry Statistics Theory Statistics Theory 55N99, 68W30, 62G99, 54E35

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