1 code implementation • 31 Mar 2024 • Yujuan Fu, Giridhar Kaushik Ramachandran, Nicholas J Dobbins, Namu Park, Michael Leu, Abby R. Rosenberg, Kevin Lybarger, Fei Xia, Ozlem Uzuner, Meliha Yetisgen
In this work, we present a novel annotated corpus, the Pediatric Social History Annotation Corpus (PedSHAC), and evaluate the automatic extraction of detailed SDoH representations using fine-tuned and in-context learning methods with Large Language Models (LLMs).
no code implementations • 12 Jun 2023 • Giridhar Kaushik Ramachandran, Yujuan Fu, Bin Han, Kevin Lybarger, Nicholas J Dobbins, Özlem Uzuner, Meliha Yetisgen
Social determinants of health (SDOH) documented in the electronic health record through unstructured text are increasingly being studied to understand how SDOH impacts patient health outcomes.
no code implementations • 13 Apr 2023 • Nicholas J Dobbins, Bin Han, Weipeng Zhou, Kristine Lan, H. Nina Kim, Robert Harrington, Ozlem Uzuner, Meliha Yetisgen
Conclusions: Our work contributes a state-of-the-art data model-agnostic query generation system capable of conditional reasoning using a knowledge base.
1 code implementation • 14 Dec 2022 • Kevin Lybarger, Nicholas J Dobbins, Ritche Long, Angad Singh, Patrick Wedgeworth, Ozlem Ozuner, Meliha Yetisgen
In an EHR case study, we applied the SDOH extractor to a large clinical data set with 225, 089 patients and 430, 406 notes with social history sections and compared the extracted SDOH information with existing structured data.
1 code implementation • 27 Jul 2022 • Nicholas J Dobbins, Tony Mullen, Ozlem Uzuner, Meliha Yetisgen
In order to identify potential participants at scale, these criteria must first be translated into queries on clinical databases, which can be labor-intensive and error-prone.