Search Results for author: Mehdi Yazdani-Jahromi

Found 4 papers, 3 papers with code

FragXsiteDTI: Revealing Responsible Segments in Drug-Target Interaction with Transformer-Driven Interpretation

1 code implementation4 Nov 2023 Ali Khodabandeh Yalabadi, Mehdi Yazdani-Jahromi, Niloofar Yousefi, Aida Tayebi, Sina Abdidizaji, Ozlem Ozmen Garibay

Drug-Target Interaction (DTI) prediction is vital for drug discovery, yet challenges persist in achieving model interpretability and optimizing performance.

Benchmarking Drug Discovery

Through a fair looking-glass: mitigating bias in image datasets

no code implementations18 Sep 2022 Amirarsalan Rajabi, Mehdi Yazdani-Jahromi, Ozlem Ozmen Garibay, Gita Sukthankar

In this study, we present a fast and effective model to de-bias an image dataset through reconstruction and minimizing the statistical dependence between intended variables.

Attribute Fairness

AttentionSiteDTI: an interpretable graph-based model for drug-target interaction prediction using NLP sentence-level relation classification

1 code implementation Briefings in Bioinformatics 2022 Mehdi Yazdani-Jahromi, Niloofar Yousefi, Aida Tayebi, Elayaraja Kolanthai, Craig J Neal, Sudipta Seal, Ozlem Ozmen Garibay

In this study, we introduce an interpretable graph-based deep learning prediction model, AttentionSiteDTI, which utilizes protein binding sites along with a self-attention mechanism to address the problem of drug–target interaction prediction.

Drug Discovery Relation Classification +2

Distraction is All You Need for Fairness

1 code implementation15 Mar 2022 Mehdi Yazdani-Jahromi, Amirarsalan Rajabi, Ali Khodabandeh Yalabadi, Aida Tayebi, Ozlem Ozmen Garibay

There is an abundance of evidence suggesting that these models could contain or even amplify the bias present in the data on which they are trained, inherent to their objective function and learning algorithms; Many researchers direct their attention to this issue in different directions, namely, changing data to be statistically independent, adversarial training for restricting the capabilities of a particular competitor who aims to maximize parity, etc.

Classification Decision Making +1

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