no code implementations • 26 Apr 2024 • Zhe Bai, Xishuo Wei, William Tang, Leonid Oliker, Zhihong Lin, Samuel Williams
Deep learning algorithms provide a new paradigm to study high-dimensional dynamical behaviors, such as those in fusion plasma systems.
3 code implementations • 20 Oct 2020 • Giulia Guidi, Oguz Selvitopi, Marquita Ellis, Leonid Oliker, Katherine Yelick, Aydin Buluc
In this work, we introduce new distributed-memory parallel algorithms for overlap detection and layout simplification steps of de novo genome assembly, and implement them in the diBELLA 2D pipeline.
Distributed, Parallel, and Cluster Computing Genomics
1 code implementation • 12 Feb 2020 • Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven Hofmeyr, Aydın Buluç, Leonid Oliker, Katherine Yelick
To highlight the impact of our work on a real-world application, we couple LOGAN with a many-to-many long-read alignment software called BELLA, and demonstrate that our implementation improves the overall BELLA runtime by up to 10. 6x.
1 code implementation • 30 Oct 2017 • Penporn Koanantakool, Alnur Ali, Ariful Azad, Aydin Buluc, Dmitriy Morozov, Leonid Oliker, Katherine Yelick, Sang-Yun Oh
Across a variety of scientific disciplines, sparse inverse covariance estimation is a popular tool for capturing the underlying dependency relationships in multivariate data.