no code implementations • 28 Jun 2018 • J. Tilak Ratnanather, Sylvain Arguillère, Kwame S. Kutten, Peter Hubka, Andrej Kral, Laurent Younes
It is assumed that the cortical ribbon consists of cortical columns which are orthogonal to the white matter surface.
no code implementations • 1 Dec 2016 • Kwame S. Kutten, Nicolas Charon, Michael I. Miller, J. T. Ratnanather, Jordan Matelsky, Alexander D. Baden, Kunal Lillaney, Karl Deisseroth, Li Ye, Joshua T. Vogelstein
Due to the novelty of this microscopy technique it is impractical to use absolute intensity values to align these images to existing standard atlases.
1 code implementation • 6 May 2016 • Kwame S. Kutten, Joshua T. Vogelstein, Nicolas Charon, Li Ye, Karl Deisseroth, Michael I. Miller
Therefore, we developed a method (Mask-LDDMM) for registering CLARITY images, that automatically find the brain boundary and learns the optimal deformation between the brain and atlas masks.
