ViDa: Visualizing DNA hybridization trajectories with biophysics-informed deep graph embeddings

1 code implementation • 6 Nov 2023 • Chenwei Zhang, Jordan Lovrod, Boyan Beronov, Khanh Dao Duc, Anne Condon

Visualization tools can help synthetic biologists and molecular programmers understand the complex reactive pathways of nucleic acid reactions, which can be designed for many potential applications and can be modelled using a continuous-time Markov chain (CTMC).

Dimensionality Reduction