scPrisma infers, filters and enhances topological signals in single-cell data using spectral template matching

1 code implementation • Nature Biotechnology 2023 • Jonathan Karin, Yonathan Bornfeld, Mor Nitzan

Single-cell RNA sequencing has been instrumental in uncovering cellular spatiotemporal context.

Template Matching

MultiRBP: Multi-task Neural Network for Protein–RNA Binding Prediction

1 code implementation • Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics 2020 • Jonathan Karin, Hagai Michel, Yaron Orenstein

High-throughput in vitro binding measurements were generated for more than 200 RNA-binding proteins, enabling the development of computational methods to predict binding to any RNA transcript of interest.