Search Results for author: Jiaxian Yan

Found 4 papers, 3 papers with code

A Systematic Survey in Geometric Deep Learning for Structure-based Drug Design

1 code implementation20 Jun 2023 Zaixi Zhang, Jiaxian Yan, Qi Liu, Enhong Chen, Marinka Zitnik

Recent developments in geometric deep learning, focusing on the integration and processing of 3D geometric data, coupled with the availability of accurate protein 3D structure predictions from tools like AlphaFold, have greatly advanced the field of structure-based drug design.

Benchmarking Drug Discovery +1

Multi-task Bioassay Pre-training for Protein-ligand Binding Affinity Prediction

1 code implementation8 Jun 2023 Jiaxian Yan, Zhaofeng Ye, ZiYi Yang, Chengqiang Lu, Shengyu Zhang, Qi Liu, Jiezhong Qiu

By introducing multi-task pre-training to treat the prediction of different affinity labels as different tasks and classifying relative rankings between samples from the same bioassay, MBP learns robust and transferrable structural knowledge from our new ChEMBL-Dock dataset with varied and noisy labels.

Drug Discovery

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