no code implementations • 4 Jan 2024 • Jai Prakash Veerla, Poojitha Thota, Partha Sai Guttikonda, Shirin Nilizadeh, Jacob M. Luber
In the dynamic landscape of medical artificial intelligence, this study explores the vulnerabilities of the Pathology Language-Image Pretraining (PLIP) model, a Vision Language Foundation model, under targeted adversarial conditions.
no code implementations • 4 Jan 2024 • Parisa Boodaghi Malidarreh, Biraaj Rout, Mohammad Sadegh Nasr, Priyanshi Borad, Jillur Rahman Saurav, Jai Prakash Veerla, Kelli Fenelon, Theodora Koromila, Jacob M. Luber
In this paper, we introduce a pipeline based on Random Forest Regression to predict the future distribution of cells that are expressed by the Sog-D gene (active cells) in both the Anterior to posterior (AP) and the Dorsal to Ventral (DV) axis of the Drosophila in embryogenesis process.
2 code implementations • 29 Jun 2023 • Helen H. Shang, Mohammad Sadegh Nasr, Jai Prakash Veerla, Parisa Boodaghi Malidarreh, MD Jillur Rahman Saurav, Amir Hajighasemi, Manfred Huber, Chace Moleta, Jitin Makker, Jacob M. Luber
The search and retrieval of digital histopathology slides is an important task that has yet to be solved.
no code implementations • 29 Jun 2023 • Michael Robben, Amir Hajighasemi, Mohammad Sadegh Nasr, Jai Prakesh Veerla, Anne M. Alsup, Biraaj Rout, Helen H. Shang, Kelli Fowlds, Parisa Boodaghi Malidarreh, Paul Koomey, MD Jillur Rahman Saurav, Jacob M. Luber
Artificial intelligence represents a new frontier in human medicine that could save more lives and reduce the costs, thereby increasing accessibility.
no code implementations • 6 May 2023 • Helen Shang, Yi Ding, Vidhya Venkateswaran, Kristin Boulier, Nikhita Kathuria-Prakash, Parisa Boodaghi Malidarreh, Jacob M. Luber, Bogdan Pasaniuc
We found that the PRS313 achieved overlapping Areas under the ROC Curve (AUCs) in females of Lantix (AUC, 0. 68; 95 CI, 0. 65-0. 71) and European ancestry (AUC, 0. 70; 95 CI, 0. 69-0. 71) but lower AUCs for the AFR and EAA populations (AFR: AUC, 0. 61; 95 CI, 0. 56-0. 65; EAA: AUC, 0. 64; 95 CI, 0. 60-0. 680).
1 code implementation • 23 Mar 2023 • Mohammad Sadegh Nasr, Amir Hajighasemi, Paul Koomey, Parisa Boodaghi Malidarreh, Michael Robben, Jillur Rahman Saurav, Helen H. Shang, Manfred Huber, Jacob M. Luber
We generate and visualize embeddings from the compressed latent space and demonstrate how they are useful for clinical interpretation of data, and how in the future such latent embeddings can be used to accelerate search of clinical imaging data.
2 code implementations • 20 May 2022 • Jillur Rahman Saurav, Mohammad Sadegh Nasr, Paul Koomey, Michael Robben, Manfred Huber, Jon Weidanz, Bríd Ryan, Eytan Ruppin, Peng Jiang, Jacob M. Luber
We validate these claims by generating a new experimental spatial proteomics data set from human lung adenocarcinoma tissue sections and show that a model trained on HuBMAP can accurately synthesize channels from our new data set.