no code implementations • NAACL (BioNLP) 2021 • William Hogan, Yoshiki Vazquez Baeza, Yannis Katsis, Tyler Baldwin, Ho-Cheol Kim, Chun-Nan Hsu
NLP has emerged as an essential tool to extract knowledge from the exponentially increasing volumes of biomedical texts.
no code implementations • 20 Aug 2022 • Jiacheng Li, Yannis Katsis, Tyler Baldwin, Ho-Cheol Kim, Andrew Bartko, Julian McAuley, Chun-Nan Hsu
To address these problems, we propose a new pre-trained model that learns representations of both entities and relationships from token spans and span pairs in the text respectively.
Ranked #4 on Relation Extraction on SemEval-2010 Task-8
1 code implementation • AKBC 2021 • William Hogan, Molly Huang, Yannis Katsis, Tyler Baldwin, Ho-Cheol Kim, Yoshiki Vazquez Baeza, Andrew Bartko, Chun-Nan Hsu
In this work, we propose a novel reformulation of MIL for biomedical relation extraction that abstractifies biomedical entities into their corresponding semantic types.
no code implementations • 30 Nov 2020 • Lingjing Jiang, Niina Haiminen, Anna-Paola Carrieri, Shi Huang, Yoshiki Vazquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Austin D. Swafford, Rob Knight, Loki Natarajan
In our paper, we compare the performance of popular model prediction metric MSE and proposed reproducibility criterion Stability in evaluating four widely used feature selection methods in both simulations and experimental microbiome applications.
no code implementations • 12 Nov 2020 • Canlin Zhang, Chun-Nan Hsu, Yannis Katsis, Ho-Cheol Kim, Yoshiki Vazquez-Baeza
Discovering precise and interpretable rules from knowledge graphs is regarded as an essential challenge, which can improve the performances of many downstream tasks and even provide new ways to approach some Natural Language Processing research topics.