no code implementations • 16 Jan 2024 • Alexandra Blenkinsop, Nikos Pantazis, Evangelia Georgia Kostaki, Lysandros Sofocleous, Ard van Sighem, Daniela Bezemer, Thijs van de Laar, Marc van der Valk, Peter Reiss, Godelieve de Bree, Oliver Ratmann
Methods: We used partial HIV consensus sequences with linked demographic and clinical data from the opt-out ATHENA cohort of people with HIV in the Netherlands to quantify population-level sources of transmission to Dutch-born and foreign-born Amsterdam men who have sex with men (MSM) between 2010-2021.
no code implementations • 13 Apr 2023 • Alexandra Blenkinsop, Lysandros Sofocleous, Francesco Di Lauro, Evangelia Georgia Kostaki, Ard van Sighem, Daniela Bezemer, Thijs van de Laar, Peter Reiss, Godelieve de Bree, Nikos Pantazis, Oliver Ratmann
In stopping the spread of infectious diseases, pathogen genomic data can be used to reconstruct transmission events and characterize population-level sources of infection.
no code implementations • 15 Mar 2022 • Alexandra Blenkinsop, Mélodie Monod, Ard van Sighem, Nikos Pantazis, Daniela Bezemer, Eline Op de Coul, Thijs van de Laar, Christophe Fraser, Maria Prins, Peter Reiss, Godelieve de Bree, Oliver Ratmann
Utilising molecular and clinical data of the ATHENA observational HIV cohort, our primary aims are to estimate the proportion of undiagnosed HIV infections and the proportion of locally acquired infections in Amsterdam in 2014-2018, both in MSM and heterosexuals and Dutch-born and foreign-born individuals.
