Search Results for author: Geyan Ye

Found 4 papers, 1 papers with code

Atomas: Hierarchical Alignment on Molecule-Text for Unified Molecule Understanding and Generation

no code implementations23 Apr 2024 Yikun Zhang, Geyan Ye, Chaohao Yuan, Bo Han, Long-Kai Huang, Jianhua Yao, Wei Liu, Yu Rong

We design a Hierarchical Adaptive Alignment model to concurrently learn the fine-grained fragment correspondence between two modalities and align these representations of fragments in three levels.

Drug Discovery molecular representation +2

Functional Protein Design with Local Domain Alignment

no code implementations18 Apr 2024 Chaohao Yuan, Songyou Li, Geyan Ye, Yikun Zhang, Long-Kai Huang, Wenbing Huang, Wei Liu, Jianhua Yao, Yu Rong

The core challenge of de novo protein design lies in creating proteins with specific functions or properties, guided by certain conditions.

Protein Annotation Protein Design

DrugAssist: A Large Language Model for Molecule Optimization

1 code implementation28 Dec 2023 Geyan Ye, Xibao Cai, Houtim Lai, Xing Wang, Junhong Huang, Longyue Wang, Wei Liu, Xiangxiang Zeng

Recently, the impressive performance of large language models (LLMs) on a wide range of tasks has attracted an increasing number of attempts to apply LLMs in drug discovery.

Drug Discovery Language Modelling +1

Multi-View Graph Neural Networks for Molecular Property Prediction

no code implementations17 May 2020 Hehuan Ma, Yatao Bian, Yu Rong, Wenbing Huang, Tingyang Xu, Weiyang Xie, Geyan Ye, Junzhou Huang

Guided by this observation, we present Multi-View Graph Neural Network (MV-GNN), a multi-view message passing architecture to enable more accurate predictions of molecular properties.

Drug Discovery Molecular Property Prediction +1

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