Search Results for author: Gerda Bortsova

Found 14 papers, 4 papers with code

Automated Segmentation and Volume Measurement of Intracranial Carotid Artery Calcification on Non-Contrast CT

no code implementations20 Jul 2021 Gerda Bortsova, Daniel Bos, Florian Dubost, Meike W. Vernooij, M. Kamran Ikram, Gijs van Tulder, Marleen de Bruijne

To evaluate the method, we compared manual and automatic assessment (computed using ten-fold cross-validation) with respect to 1) the agreement with an independent observer's assessment (available in a random subset of 47 scans); 2) the accuracy in delineating ICAC as judged via blinded visual comparison by an expert; 3) the association with first stroke incidence from the scan date until 2012.

Adversarial Heart Attack: Neural Networks Fooled to Segment Heart Symbols in Chest X-Ray Images

no code implementations31 Mar 2021 Gerda Bortsova, Florian Dubost, Laurens Hogeweg, Ioannis Katramados, Marleen de Bruijne

Previous studies have shown that it is possible to adversarially manipulate automated segmentations produced by neural networks in a targeted manner in the white-box attack setting.

Semantic Segmentation

DS6, Deformation-aware Semi-supervised Learning: Application to Small Vessel Segmentation with Noisy Training Data

3 code implementations18 Jun 2020 Soumick Chatterjee, Kartik Prabhu, Mahantesh Pattadkal, Gerda Bortsova, Chompunuch Sarasaen, Florian Dubost, Hendrik Mattern, Marleen de Bruijne, Oliver Speck, Andreas Nürnberger

The deep learning model based on U-Net Multi-Scale Supervision was trained using the training subset and was made equivariant to elastic deformations in a self-supervised manner using deformation-aware learning to improve the generalisation performance.

Semi-Supervised Medical Image Segmentation via Learning Consistency under Transformations

no code implementations4 Nov 2019 Gerda Bortsova, Florian Dubost, Laurens Hogeweg, Ioannis Katramados, Marleen de Bruijne

In this paper, we propose a novel semi-supervised method that, in addition to supervised learning on labeled training images, learns to predict segmentations consistent under a given class of transformations on both labeled and unlabeled images.

Image Segmentation Segmentation +2

Multi-Task Attention-Based Semi-Supervised Learning for Medical Image Segmentation

1 code implementation29 Jul 2019 Shuai Chen, Gerda Bortsova, Antonio Garcia-Uceda Juarez, Gijs van Tulder, Marleen de Bruijne

The reconstruction objective uses an attention mechanism that separates the reconstruction of image areas corresponding to different classes.

Image Segmentation Medical Image Segmentation +2

Weakly Supervised Object Detection with 2D and 3D Regression Neural Networks

no code implementations5 Jun 2019 Florian Dubost, Hieab Adams, Pinar Yilmaz, Gerda Bortsova, Gijs van Tulder, M. Arfan Ikram, Wiro Niessen, Meike Vernooij, Marleen de Bruijne

For comparison, we modify state-of-the-art methods to compute attention maps for weakly supervised object detection, by using a global regression objective instead of the more conventional classification objective.

object-detection regression +1

Deep Learning from Label Proportions for Emphysema Quantification

no code implementations23 Jul 2018 Gerda Bortsova, Florian Dubost, Silas Ørting, Ioannis Katramados, Laurens Hogeweg, Laura Thomsen, Mathilde Wille, Marleen de Bruijne

We propose an end-to-end deep learning method that learns to estimate emphysema extent from proportions of the diseased tissue.

Hydranet: Data Augmentation for Regression Neural Networks

no code implementations12 Jul 2018 Florian Dubost, Gerda Bortsova, Hieab Adams, M. Arfan Ikram, Wiro Niessen, Meike Vernooij, Marleen de Bruijne

The proposed method reached an intraclass correlation coefficient between ground truth and network predictions of 0. 73 on the first task and 0. 84 on the second task, only using between 25 and 30 scans with a single global label per scan for training.

Data Augmentation regression

GP-Unet: Lesion Detection from Weak Labels with a 3D Regression Network

no code implementations22 May 2017 Florian Dubost, Gerda Bortsova, Hieab Adams, Arfan Ikram, Wiro Niessen, Meike Vernooij, Marleen de Bruijne

We train a regression network with a fully convolutional architecture combined with a global pooling layer to aggregate the 3D output into a scalar indicating the lesion count.

Lesion Detection regression

Mitosis Detection in Intestinal Crypt Images with Hough Forest and Conditional Random Fields

no code implementations26 Aug 2016 Gerda Bortsova, Michael Sterr, Lichao Wang, Fausto Milletari, Nassir Navab, Anika Böttcher, Heiko Lickert, Fabian Theis, Tingying Peng

A statistical analysis of these measurements requires annotation of mitosis events, which is currently a tedious and time-consuming task that has to be performed manually.

Mitosis Detection

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