Search Results for author: Gengmo Zhou

Found 3 papers, 1 papers with code

Do Deep Learning Methods Really Perform Better in Molecular Conformation Generation?

no code implementations14 Feb 2023 Gengmo Zhou, Zhifeng Gao, Zhewei Wei, Hang Zheng, Guolin Ke

However, to our surprise, we design a simple and cheap algorithm (parameter-free) based on the traditional methods and find it is comparable to or even outperforms deep learning based MCG methods in the widely used GEOM-QM9 and GEOM-Drugs benchmarks.

Drug Discovery

Predicting Protein-Ligand Binding Affinity via Joint Global-Local Interaction Modeling

no code implementations18 Sep 2022 Yang Zhang, Gengmo Zhou, Zhewei Wei, Hongteng Xu

The prediction of protein-ligand binding affinity is of great significance for discovering lead compounds in drug research.

Uni-Mol: A Universal 3D Molecular Representation Learning Framework

1 code implementation ChemRxiv 2022 Gengmo Zhou, Zhifeng Gao, Qiankun Ding, Hang Zheng, Hongteng Xu, Zhewei Wei, Linfeng Zhang, Guolin Ke

Uni-Mol is composed of two models with the same SE(3)-equivariant transformer architecture: a molecular pretraining model trained by 209M molecular conformations; a pocket pretraining model trained by 3M candidate protein pocket data.

3D Geometry Prediction molecular representation +3

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