Transcriptome-supervised classification of tissue morphology using deep learning

no code implementations • 7 Dec 2023 • Axel Andersson, Gabriele Partel, Leslie Solorzano, Carolina Wählby

Here we conjecture that spatially resolved gene expression, e. i., the transcriptome, can be used as an alternative to manual annotations.

Improving Recall of In Situ Sequencing by Self-Learned Features and a Graphical Model

no code implementations • 24 Feb 2018 • Gabriele Partel, Giorgia Milli, Carolina Wählby

Image-based sequencing of mRNA makes it possible to see where in a tissue sample a given gene is active, and thus discern large numbers of different cell types in parallel.