Search Results for author: Ezequiel de la Rosa

Found 13 papers, 5 papers with code

MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Vision

1 code implementation30 Aug 2023 Jianning Li, Zongwei Zhou, Jiancheng Yang, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Chongyu Qu, Tiezheng Zhang, Xiaoxi Chen, Wenxuan Li, Marek Wodzinski, Paul Friedrich, Kangxian Xie, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Viet Duc Vu, Afaque R. Memon, Christopher Schlachta, Sandrine de Ribaupierre, Rajnikant Patel, Roy Eagleson, Xiaojun Chen, Heinrich Mächler, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Arcot Sowmya, Eduardo A. Garza-Villarreal, Thania Balducci, Diego Angeles-Valdez, Roberto Souza, Leticia Rittner, Richard Frayne, Yuanfeng Ji, Vincenzo Ferrari, Soumick Chatterjee, Florian Dubost, Stefanie Schreiber, Hendrik Mattern, Oliver Speck, Daniel Haehn, Christoph John, Andreas Nürnberger, João Pedrosa, Carlos Ferreira, Guilherme Aresta, António Cunha, Aurélio Campilho, Yannick Suter, Jose Garcia, Alain Lalande, Vicky Vandenbossche, Aline Van Oevelen, Kate Duquesne, Hamza Mekhzoum, Jef Vandemeulebroucke, Emmanuel Audenaert, Claudia Krebs, Timo Van Leeuwen, Evie Vereecke, Hauke Heidemeyer, Rainer Röhrig, Frank Hölzle, Vahid Badeli, Kathrin Krieger, Matthias Gunzer, Jianxu Chen, Timo van Meegdenburg, Amin Dada, Miriam Balzer, Jana Fragemann, Frederic Jonske, Moritz Rempe, Stanislav Malorodov, Fin H. Bahnsen, Constantin Seibold, Alexander Jaus, Zdravko Marinov, Paul F. Jaeger, Rainer Stiefelhagen, Ana Sofia Santos, Mariana Lindo, André Ferreira, Victor Alves, Michael Kamp, Amr Abourayya, Felix Nensa, Fabian Hörst, Alexander Brehmer, Lukas Heine, Yannik Hanusrichter, Martin Weßling, Marcel Dudda, Lars E. Podleska, Matthias A. Fink, Julius Keyl, Konstantinos Tserpes, Moon-Sung Kim, Shireen Elhabian, Hans Lamecker, Dženan Zukić, Beatriz Paniagua, Christian Wachinger, Martin Urschler, Luc Duong, Jakob Wasserthal, Peter F. Hoyer, Oliver Basu, Thomas Maal, Max J. H. Witjes, Gregor Schiele, Ti-chiun Chang, Seyed-Ahmad Ahmadi, Ping Luo, Bjoern Menze, Mauricio Reyes, Thomas M. Deserno, Christos Davatzikos, Behrus Puladi, Pascal Fua, Alan L. Yuille, Jens Kleesiek, Jan Egger

For the medical domain, we present a large collection of anatomical shapes (e. g., bones, organs, vessels) and 3D models of surgical instrument, called MedShapeNet, created to facilitate the translation of data-driven vision algorithms to medical applications and to adapt SOTA vision algorithms to medical problems.

Anatomy Mixed Reality

Differentiable Deconvolution for Improved Stroke Perfusion Analysis

no code implementations31 Mar 2021 Ezequiel de la Rosa, David Robben, Diana M. Sima, Jan S. Kirschke, Bjoern Menze

We show that our approach is able to generate AIFs without any manual annotation, and hence avoiding manual rater's influences.

Lesion Segmentation

An augmentation strategy to mimic multi-scanner variability in MRI

1 code implementation23 Mar 2021 Maria Ines Meyer, Ezequiel de la Rosa, Nuno Barros, Roberto Paolella, Koen van Leemput, Diana M. Sima

Most publicly available brain MRI datasets are very homogeneous in terms of scanner and protocols, and it is difficult for models that learn from such data to generalize to multi-center and multi-scanner data.

Data Augmentation

Unsupervised 3D Brain Anomaly Detection

no code implementations9 Oct 2020 Jaime Simarro, Ezequiel de la Rosa, Thijs Vande Vyvere, David Robben, Diana M. Sima

Moreover, we test the potential of the method for detecting other anomalies such as low quality images, preprocessing inaccuracies, artifacts, and even the presence of post-operative signs (such as a craniectomy or a brain shunt).

Anomaly Detection

AIFNet: Automatic Vascular Function Estimation for Perfusion Analysis Using Deep Learning

no code implementations4 Oct 2020 Ezequiel de la Rosa, Diana M. Sima, Bjoern Menze, Jan S. Kirschke, David Robben

Perfusion imaging is crucial in acute ischemic stroke for quantifying the salvageable penumbra and irreversibly damaged core lesions.

Clustering

Segmentation-free Estimation of Aortic Diameters from MRI Using Deep Learning

no code implementations9 Sep 2020 Axel Aguerreberry, Ezequiel de la Rosa, Alain Lalande, Elmer Fernandez

Our approach makes use of a 3D+2D convolutional neural network (CNN) that takes as input a 3D scan and outputs the aortic diameter at a given location.

Decision Making

Relevance Vector Machines for harmonization of MRI brain volumes using image descriptors

no code implementations8 Nov 2019 Maria Ines Meyer, Ezequiel de la Rosa, Koen van Leemput, Diana M. Sima

In this work, we explore a novel approach to harmonize brain volume measurements by using only image descriptors.

Myocardial Infarction Quantification From Late Gadolinium Enhancement MRI Using Top-hat Transforms and Neural Networks

no code implementations9 Jan 2019 Ezequiel de la Rosa, Désiré Sidibé, Thomas Decourselle, Thibault Leclercq, Alexandre Cochet, Alain Lalande

Although the technique accurately reflects the damaged tissue, there is no clinical standard for quantifying myocardial infarction (MI), demanding most algorithms to be expert dependent.

Segmentation

A Radiomics Approach to Traumatic Brain Injury Prediction in CT Scans

no code implementations14 Nov 2018 Ezequiel de la Rosa, Diana M. Sima, Thijs Vande Vyvere, Jan S. Kirschke, Bjoern Menze

Relevant shape, intensity and texture biomarkers characterizing the different lesions are isolated and a lesion predictive model is built by using Partial Least Squares.

Decision Making Injury Prediction +2

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