Search Results for author: Dongyu Xue

Found 3 papers, 1 papers with code

Antigen-Specific Antibody Design via Direct Energy-based Preference Optimization

no code implementations25 Mar 2024 Xiangxin Zhou, Dongyu Xue, Ruizhe Chen, Zaixiang Zheng, Liang Wang, Quanquan Gu

Antibody design, a crucial task with significant implications across various disciplines such as therapeutics and biology, presents considerable challenges due to its intricate nature.

Total Energy

Diffusion Language Models Are Versatile Protein Learners

no code implementations28 Feb 2024 Xinyou Wang, Zaixiang Zheng, Fei Ye, Dongyu Xue, ShuJian Huang, Quanquan Gu

This paper introduces diffusion protein language model (DPLM), a versatile protein language model that demonstrates strong generative and predictive capabilities for protein sequences.

Protein Language Model

Structure-informed Language Models Are Protein Designers

1 code implementation3 Feb 2023 Zaixiang Zheng, Yifan Deng, Dongyu Xue, Yi Zhou, Fei Ye, Quanquan Gu

This paper demonstrates that language models are strong structure-based protein designers.

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