no code implementations • 8 Apr 2024 • Kui Qian, Litao Qiao, Beth Friedman, Edward O'Donnell, David Kleinfeld, Yoav Freund
It is based on the automated recognition of interpretable features obtained by analyzing the shapes of cells.
no code implementations • 9 Mar 2018 • Yuncong Chen, David Kleinfeld, Martyn Goulding, Yoav Freund
In this work we describe the first steps in developing a semi-automated system to construct a histology at- las of mouse brainstem that combines atlas-guided annotation, landmark-based registration and atlas generation in an iterative framework.
no code implementations • 28 Feb 2017 • Yuncong Chen, Lauren McElvain, Alex Tolpygo, Daniel Ferrante, Harvey Karten, Partha Mitra, David Kleinfeld, Yoav Freund
We have developed a digital atlas methodology that combines information about the 3D organization of the brain and the detailed texture of neurons in different structures.