Search Results for author: Carl D. Modes

Found 5 papers, 1 papers with code

ToSkA: Topological Skeleton Analysis for Network-Based Shape Representation and Evaluation of Objects from Cells to Death Stars

no code implementations17 Nov 2023 Allyson Quinn Ryan, Carl D. Modes

Shape analysis and classification are popular methods for biologists, biophysicists and mathematicians investigating relationships between object function and form.

Object

Impossible ecologies: Interaction networks and stability of coexistence in ecological communities

no code implementations28 Sep 2023 Yu Meng, Szabolcs Horvát, Carl D. Modes, Pierre A. Haas

Here, we therefore develop a different approach, of exhaustive analysis of small ecological communities, to show that this arrangement of interactions can influence stability of coexistence more than these general trends.

On biological flow networks: Antagonism between hydrodynamic and metabolic stimuli as driver of topological transitions

no code implementations8 Nov 2021 Felix Kramer, Carl D. Modes

A plethora of computational models have been developed in recent decades to account for the morphogenesis of complex biological fluid networks, such as capillary beds.

ANDOR and beyond: dynamically switchable logic gates as modules for flexible information processing in biochemical regulatory networks

no code implementations2 Aug 2021 Mohammadreza Bahadorian, Carl D. Modes

An information processing circuit must be flexible to perform multiple tasks: biochemical information processing circuits in living systems can have multiple functions, requiring them to perform distinct computational tasks in different scenarios.

Connectivity matters: Construction and exact random sampling of connected graphs

1 code implementation8 Sep 2020 Szabolcs Horvát, Carl D. Modes

We describe a new method for the random sampling of connected graphs with a specified degree sequence.

Physics and Society Discrete Mathematics Combinatorics

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