Search Results for author: Bowen Gao

Found 7 papers, 2 papers with code

Rethinking Specificity in SBDD: Leveraging Delta Score and Energy-Guided Diffusion

no code implementations4 Mar 2024 Bowen Gao, Minsi Ren, Yuyan Ni, Yanwen Huang, Bo Qiang, Zhi-Ming Ma, Wei-Ying Ma, Yanyan Lan

In the field of Structure-based Drug Design (SBDD), deep learning-based generative models have achieved outstanding performance in terms of docking score.

Contrastive Learning Specificity

Delta Score: Improving the Binding Assessment of Structure-Based Drug Design Methods

no code implementations1 Nov 2023 Minsi Ren, Bowen Gao, Bo Qiang, Yanyan Lan

Structure-based drug design (SBDD) stands at the forefront of drug discovery, emphasizing the creation of molecules that target specific binding pockets.

Drug Discovery

ProFSA: Self-supervised Pocket Pretraining via Protein Fragment-Surroundings Alignment

no code implementations11 Oct 2023 Bowen Gao, Yinjun Jia, Yuanle Mo, Yuyan Ni, WeiYing Ma, ZhiMing Ma, Yanyan Lan

Pocket representations play a vital role in various biomedical applications, such as druggability estimation, ligand affinity prediction, and de novo drug design.

DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening

1 code implementation10 Oct 2023 Bowen Gao, Bo Qiang, Haichuan Tan, Minsi Ren, Yinjun Jia, Minsi Lu, Jingjing Liu, WeiYing Ma, Yanyan Lan

Virtual screening, which identifies potential drugs from vast compound databases to bind with a particular protein pocket, is a critical step in AI-assisted drug discovery.

Contrastive Learning Data Augmentation +3

Exploring Efficient-Tuned Learning Audio Representation Method from BriVL

no code implementations8 Mar 2023 Sen Fang, Yangjian Wu, Bowen Gao, Jingwen Cai, Teik Toe Teoh

Recently, researchers have gradually realized that in some cases, the self-supervised pre-training on large-scale Internet data is better than that of high-quality/manually labeled data sets, and multimodal/large models are better than single or bimodal/small models.

Image Generation Representation Learning

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