no code implementations • 11 Sep 2022 • Sarwan Ali, Bikram Sahoo, Muhammad Asad Khan, Alexander Zelikovsky, Imdad Ullah Khan, Murray Patterson
More specifically, we improve the quality of the approximate kernel using domain knowledge (computed using information gain) and efficient preprocessing (using minimizers computation) to classify coronavirus spike protein sequences corresponding to different variants (e. g., Alpha, Beta, Gamma).
1 code implementation • 18 Jul 2022 • Sarwan Ali, Bikram Sahoo, Alexander Zelikovskiy, Pin-Yu Chen, Murray Patterson
The rapid spread of the COVID-19 pandemic has resulted in an unprecedented amount of sequence data of the SARS-CoV-2 genome -- millions of sequences and counting.
no code implementations • 29 Sep 2021 • Sarwan Ali, Bikram Sahoo, Pin-Yu Chen, Murray Patterson
The rapid spread of the COVID-19 pandemic has resulted in an unprecedented amount of sequence data of the SARS-CoV-2 viral genome --- millions of sequences and counting.
no code implementations • 7 Aug 2021 • Sarwan Ali, Bikram Sahoo, Naimat Ullah, Alexander Zelikovskiy, Murray Patterson, Imdadullah Khan
With the rapid spread of the novel coronavirus (COVID-19) across the globe and its continuous mutation, it is of pivotal importance to design a system to identify different known (and unknown) variants of SARS-CoV-2.