Search Results for author: Bikram Sahoo

Found 4 papers, 1 papers with code

Efficient Approximate Kernel Based Spike Sequence Classification

no code implementations11 Sep 2022 Sarwan Ali, Bikram Sahoo, Muhammad Asad Khan, Alexander Zelikovsky, Imdad Ullah Khan, Murray Patterson

More specifically, we improve the quality of the approximate kernel using domain knowledge (computed using information gain) and efficient preprocessing (using minimizers computation) to classify coronavirus spike protein sequences corresponding to different variants (e. g., Alpha, Beta, Gamma).

Classification Clustering

Benchmarking Machine Learning Robustness in Covid-19 Genome Sequence Classification

1 code implementation18 Jul 2022 Sarwan Ali, Bikram Sahoo, Alexander Zelikovskiy, Pin-Yu Chen, Murray Patterson

The rapid spread of the COVID-19 pandemic has resulted in an unprecedented amount of sequence data of the SARS-CoV-2 genome -- millions of sequences and counting.

Benchmarking BIG-bench Machine Learning +1

Benchmarking Machine Learning Robustness in Covid-19 Spike Sequence Classification

no code implementations29 Sep 2021 Sarwan Ali, Bikram Sahoo, Pin-Yu Chen, Murray Patterson

The rapid spread of the COVID-19 pandemic has resulted in an unprecedented amount of sequence data of the SARS-CoV-2 viral genome --- millions of sequences and counting.

Benchmarking BIG-bench Machine Learning +1

A k-mer Based Approach for SARS-CoV-2 Variant Identification

no code implementations7 Aug 2021 Sarwan Ali, Bikram Sahoo, Naimat Ullah, Alexander Zelikovskiy, Murray Patterson, Imdadullah Khan

With the rapid spread of the novel coronavirus (COVID-19) across the globe and its continuous mutation, it is of pivotal importance to design a system to identify different known (and unknown) variants of SARS-CoV-2.

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