Search Results for author: Artem Cherkasov

Found 4 papers, 2 papers with code

TacoGFN: Target-conditioned GFlowNet for Structure-based Drug Design

1 code implementation5 Oct 2023 Tony Shen, Seonghwan Seo, Grayson Lee, Mohit Pandey, Jason R Smith, Artem Cherkasov, Woo Youn Kim, Martin Ester

Searching the vast chemical space for drug-like and synthesizable molecules with high binding affinity to a protein pocket is a challenging task in drug discovery.

Active Learning Drug Discovery

All SMILES Variational Autoencoder for Molecular Property Prediction and Optimization

no code implementations25 Sep 2019 Zaccary Alperstein, Artem Cherkasov, Jason Rolfe

Variational autoencoders (VAEs) defined over SMILES string and graph-based representations of molecules promise to improve the optimization of molecular properties, thereby revolutionizing the pharmaceuticals and materials industries.

Molecular Property Prediction Property Prediction

All SMILES Variational Autoencoder

no code implementations30 May 2019 Zaccary Alperstein, Artem Cherkasov, Jason Tyler Rolfe

Variational autoencoders (VAEs) defined over SMILES string and graph-based representations of molecules promise to improve the optimization of molecular properties, thereby revolutionizing the pharmaceuticals and materials industries.

 Ranked #1 on Molecular Graph Generation on ZINC (QED Top-3 metric)

Drug Discovery Molecular Graph Generation

PADME: A Deep Learning-based Framework for Drug-Target Interaction Prediction

2 code implementations25 Jul 2018 Qingyuan Feng, Evgenia Dueva, Artem Cherkasov, Martin Ester

In silico drug-target interaction (DTI) prediction is an important and challenging problem in biomedical research with a huge potential benefit to the pharmaceutical industry and patients.

Feature Engineering

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