1 code implementation • 1 Mar 2024 • Kirill Prokhorov, Alexandr A. Kalinin
Addressing these limitations, we proposed to incorporate severity scale information into lesion counting by combining LDL with label smoothing, and to decouple if from global assessment.
1 code implementation • 22 Nov 2023 • Erik Serrano, Srinivas Niranj Chandrasekaran, Dave Bunten, Kenneth I. Brewer, Jenna Tomkinson, Roshan Kern, Michael Bornholdt, Stephen Fleming, Ruifan Pei, John Arevalo, Hillary Tsang, Vincent Rubinetti, Callum Tromans-Coia, Tim Becker, Erin Weisbart, Charlotte Bunne, Alexandr A. Kalinin, Rebecca Senft, Stephen J. Taylor, Nasim Jamali, Adeniyi Adeboye, Hamdah Shafqat Abbasi, Allen Goodman, Juan C. Caicedo, Anne E. Carpenter, Beth A. Cimini, Shantanu Singh, Gregory P. Way
Technological advances in high-throughput microscopy have facilitated the acquisition of cell images at a rapid pace, and data pipelines can now extract and process thousands of image-based features from microscopy images.
1 code implementation • 29 May 2021 • Benjamin D. Lee, Anthony Gitter, Casey S. Greene, Sebastian Raschka, Finlay Maguire, Alexander J. Titus, Michael D. Kessler, Alexandra J. Lee, Marc G. Chevrette, Paul Allen Stewart, Thiago Britto-Borges, Evan M. Cofer, Kun-Hsing Yu, Juan Jose Carmona, Elana J. Fertig, Alexandr A. Kalinin, Beth Signal, Benjamin J. Lengerich, Timothy J. Triche Jr, Simina M. Boca
In particular, machine learning is concerned with the development and applications of algorithms that can recognize patterns in data and use them for predictive modeling.
4 code implementations • 4 Apr 2021 • Roman Solovyev, Alexandr A. Kalinin, Tatiana Gabruseva
Recent advances in imaging technology enabled generation of high-quality 3D images that can be used to visualize stalled blood vessels.
1 code implementation • 28 May 2020 • Tatiana Gabruseva, Dmytro Poplavskiy, Alexandr A. Kalinin
Pneumonia is the leading cause of death among young children and one of the top mortality causes worldwide.
no code implementations • 5 May 2019 • Alexander Rakhlin, Aleksei Tiulpin, Alexey A. Shvets, Alexandr A. Kalinin, Vladimir I. Iglovikov, Sergey Nikolenko
Breast cancer is one of the main causes of death worldwide.
4 code implementations • 18 Sep 2018 • Alexander Buslaev, Alex Parinov, Eugene Khvedchenya, Vladimir I. Iglovikov, Alexandr A. Kalinin
We provide examples of image augmentations for different computer vision tasks and show that Albumentations is faster than other commonly used image augmentation tools on the most of commonly used image transformations.
1 code implementation • 21 Apr 2018 • Alexey Shvets, Vladimir Iglovikov, Alexander Rakhlin, Alexandr A. Kalinin
Accurate detection and localization for angiodysplasia lesions is an important problem in early stage diagnostics of gastrointestinal bleeding and anemia.
2 code implementations • 3 Mar 2018 • Alexey Shvets, Alexander Rakhlin, Alexandr A. Kalinin, Vladimir Iglovikov
Semantic segmentation of robotic instruments is an important problem for the robot-assisted surgery.
3 code implementations • 2 Feb 2018 • Alexander Rakhlin, Alexey Shvets, Vladimir Iglovikov, Alexandr A. Kalinin
In this work, we develop the computational approach based on deep convolution neural networks for breast cancer histology image classification.
no code implementations • 25 Jan 2018 • Alexandr A. Kalinin, Gerald A. Higgins, Narathip Reamaroon, S. M. Reza Soroushmehr, Ari Allyn-Feuer, Ivo D. Dinov, Kayvan Najarian, Brian D. Athey
This Perspective provides examples of current and future applications of deep learning in pharmacogenomics, including: (1) identification of novel regulatory variants located in noncoding domains and their function as applied to pharmacoepigenomics; (2) patient stratification from medical records; and (3) prediction of drugs, targets, and their interactions.