no code implementations • 26 Apr 2024 • Areej Alsaafin, Peyman Nejat, Abubakr Shafique, Jibran Khan, Saghir Alfasly, Ghazal Alabtah, H. R. Tizhoosh
As an unsupervised method, SPLICE effectively reduces storage requirements for representing tissue images by 50%.
no code implementations • 6 Jan 2024 • Isaiah Lahr, Saghir Alfasly, Peyman Nejat, Jibran Khan, Luke Kottom, Vaishnavi Kumbhar, Areej Alsaafin, Abubakr Shafique, Sobhan Hemati, Ghazal Alabtah, Nneka Comfere, Dennis Murphee, Aaron Mangold, Saba Yasir, Chady Meroueh, Lisa Boardman, Vijay H. Shah, Joaquin J. Garcia, H. R. Tizhoosh
Searching for similar images in archives of histology and histopathology images is a crucial task that may aid in patient matching for various purposes, ranging from triaging and diagnosis to prognosis and prediction.
no code implementations • 16 Nov 2023 • Abubakr Shafique, Saghir Alfasly, Areej Alsaafin, Peyman Nejat, Jibran A. Khan, H. R. Tizhoosh
We assess the representativeness of the SDM montage across various public and private histopathology datasets.
no code implementations • 14 Nov 2023 • Saghir Alfasly, Abubakr Shafique, Peyman Nejat, Jibran Khan, Areej Alsaafin, Ghazal Alabtah, H. R. Tizhoosh
This paper addresses complex challenges in histopathological image analysis through three key contributions.
Breast Cancer Histology Image Classification Medical Image Retrieval +2
no code implementations • 14 Sep 2023 • Saghir Alfasly, Peyman Nejat, Sobhan Hemati, Jibran Khan, Isaiah Lahr, Areej Alsaafin, Abubakr Shafique, Nneka Comfere, Dennis Murphree, Chady Meroueh, Saba Yasir, Aaron Mangold, Lisa Boardman, Vijay Shah, Joaquin J. Garcia, H. R. Tizhoosh
Recently, several studies have reported on the fine-tuning of foundation models for image-text modeling in the field of medicine, utilizing images from online data sources such as Twitter and PubMed.
no code implementations • 22 Aug 2023 • Abubakr Shafique, Ricardo Gonzalez, Liron Pantanowitz, Puay Hoon Tan, Alberto Machado, Ian A Cree, Hamid R. Tizhoosh
Searchable digital atlases can provide pathologists with patch matching tools allowing them to search among evidently diagnosed and treated archival cases, a technology that may be regarded as computational second opinion.
no code implementations • 24 Apr 2023 • Abubakr Shafique, Morteza Babaie, Ricardo Gonzalez, H. R. Tizhoosh
In this work, we are proposing a targeted image search approach, inspired by the pathologists workflow, which may use information from multiple IHC biomarker images when available.
no code implementations • 24 Apr 2023 • Abubakr Shafique, Morteza Babaie, Ricardo Gonzalez, Adrian Batten, Soma Sikdar, H. R. Tizhoosh
In the first step, IHC biomarker images are aligned with the H&E images using one coordinate system and orientation.
no code implementations • 7 Apr 2023 • Milad Sikaroudi, Mehdi Afshari, Abubakr Shafique, Shivam Kalra, H. R. Tizhoosh
Chen et al. [Chen2022] recently published the article 'Fast and scalable search of whole-slide images via self-supervised deep learning' in Nature Biomedical Engineering.
no code implementations • 29 Jul 2021 • Abubakr Shafique, Morteza Babaie, Mahjabin Sajadi, Adrian Batten, Soma Skdar, H. R. Tizhoosh
The registration was performed automatically by first detecting landmarks in both images, using the scale-invariant image transform (SIFT), followed by the fast sample consensus (FSC) protocol for finding point correspondences and finally aligned the images.