Multiple Sequence Alignment

18 papers with code • 3 benchmarks • 0 datasets

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Latest papers with no code

Dynamic Programming Algorithms for Discovery of Antibiotic Resistance in Microbial Genomes

no code yet • 29 Nov 2023

The translation of comparative genomics into clinical decision support tools often depends on the quality of sequence alignments.

Linear normalised hash function for clustering gene sequences and identifying reference sequences from multiple sequence alignments

no code yet • 29 Nov 2023

The combination of MSA with the linear mapping hash function is a computationally efficient way of gene sequence clustering and can be a valuable tool for the assessment of similarity, clustering of different microbial genomes, identifying reference sequences, and for the study of evolution of bacteria and viruses.

High Performance Multiple Sequence Alignment Algorithms for Comparison of Microbial Genomes

no code yet • 29 Nov 2023

Advances in gene sequencing have enabled in silico analyses of microbial genomes and have led to the revision of concepts of microbial taxonomy and evolution.

Aligning Speakers: Evaluating and Visualizing Text-based Diarization Using Efficient Multiple Sequence Alignment (Extended Version)

no code yet • 14 Sep 2023

This paper presents a novel evaluation approach to text-based speaker diarization (SD), tackling the limitations of traditional metrics that do not account for any contextual information in text.

Small Coupling Expansion for Multiple Sequence Alignment

no code yet • 7 Oct 2022

The alignment of biological sequences such as DNA, RNA, and proteins, is one of the basic tools that allow to detect evolutionary patterns, as well as functional/structural characterizations between homologous sequences in different organisms.

Pairwise sequence alignment at arbitrarily large evolutionary distance

no code yet • 25 Jul 2022

Ancestral sequence reconstruction is a key task in computational biology.

Few Shot Protein Generation

no code yet • 3 Apr 2022

We present the MSA-to-protein transformer, a generative model of protein sequences conditioned on protein families represented by multiple sequence alignments (MSAs).

Un nouvel algorithme pour la detection des transferts horizontaux de genes partiels entre les especes et pour la classification des transferts inferes

no code yet • 25 Dec 2021

In this article we are describing a new algorithm for detecting and validating partial horizontal gene transfers (HGT).

PEACH Tree: A Multiple Sequence Alignment and Tree Display Tool for Epidemiologists

no code yet • 12 Dec 2021

PEACH Tree is an easy-to-use, online tool for displaying multiple sequence alignments and phylogenetic trees side-by-side.

Pre-training Co-evolutionary Protein Representation via A Pairwise Masked Language Model

no code yet • 29 Oct 2021

The key problem in the protein sequence representation learning is to capture the co-evolutionary information reflected by the inter-residue co-variation in the sequences.