Hierarchical Multi-Label Classification Networks

ICML 2018  ยท  Jonatas Wehrmann, Ricardo Cerri, Rodrigo Barros ยท

One of the most challenging machine learning problems is a particular case of data classification in which classes are hierarchically structured and objects can be assigned to multiple paths of the class hierarchy at the same time. This task is known as hierarchical multi-label classification (HMC), with applications in text classification, image annotation, and in bioinformatics problems such as protein function prediction. In this paper, we propose novel neural network architectures for HMC called HMCN, capable of simultaneously optimizing local and global loss functions for discovering local hierarchical class-relationships and global information from the entire class hierarchy while penalizing hierarchical violations. We evaluate its performance in 21 datasets from four distinct domains, and we compare it against the current HMC state-of-the-art approaches. Results show that HMCN substantially outperforms all baselines with statistical significance, arising as the novel state-of-the-art for HMC.

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Task Dataset Model Metric Name Metric Value Global Rank Benchmark
Hierarchical Multi-label Classification Cellcycle Funcat HMCN-F AU(PRC) 0.252 # 2
Hierarchical Multi-label Classification Cellcycle GO HMCN-F AU(PRC) 0.400 # 2
Hierarchical Multi-label Classification Derisi Funcat HMCN-F AU(PRC) 0.193 # 2
Hierarchical Multi-label Classification Derisi GO HMCN-F AU(PRC) 0.369 # 2
Hierarchical Multi-label Classification Eisen Funcat HMCN-F AU(PRC) 0.298 # 2
Hierarchical Multi-label Classification Eisen GO HMCN-F AU(PRC) 0.440 # 2
Hierarchical Multi-label Classification Expr Funcat HMCN-F AU(PRC) 0.301 # 2
Hierarchical Multi-label Classification Expr GO HMCN-F AU(PRC) 0.452 # 1
Hierarchical Multi-label Classification Gasch1 Funcat HMCN-F AU(PRC) 0.284 # 2
Hierarchical Multi-label Classification Gasch1 GO HMCN-F AU(PRC) 0.428 # 2
Hierarchical Multi-label Classification Gasch2 Funcat HMCN-F AU(PRC) 0.254 # 2
Hierarchical Multi-label Classification Gasch2 GO HMCN-F AU(PRC) 0.465 # 1
Hierarchical Multi-label Classification Seq Funcat HMCN-F AU(PRC) 0.291 # 2
Hierarchical Multi-label Classification Seq GO HMCN-F AU(PRC) 0.447 # 1
Hierarchical Multi-label Classification Spo Funcat HMCN-F AU(PRC) 0.211 # 2
Hierarchical Multi-label Classification Spo GO HMCN-F AU(PRC) 0.376 # 2

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