Deep feature transfer between localization and segmentation tasks

6 Nov 2018 · Szu-Yeu Hu, Andrew Beers, Ken Chang, Kathi Höbel, J. Peter Campbell, Deniz Erdogumus, Stratis Ioannidis, Jennifer Dy, Michael F. Chiang, Jayashree Kalpathy-Cramer, James M. Brown ·

In this paper, we propose a new pre-training scheme for U-net based image segmentation. We first train the encoding arm as a localization network to predict the center of the target, before extending it into a U-net architecture for segmentation. We apply our proposed method to the problem of segmenting the optic disc from fundus photographs. Our work shows that the features learned by encoding arm can be transferred to the segmentation network to reduce the annotation burden. We propose that an approach could have broad utility for medical image segmentation, and alleviate the burden of delineating complex structures by pre-training on annotations that are much easier to acquire.

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